RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 CUL4BQ13620 913 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 CELF3Q5SZQ8 465 aaKnown RBP22.24■■□□□ 1.15
CLN3-205ENST00000359984 SASS6Q6UVJ0 657 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 ABHD15Q6UXT9 468 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 KCTD17Q8N5Z5 321 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 SPATA20Q8TB22 786 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 SAGE1Q9NXZ1 904 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 PLA2G4BP0C869 781 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 XRCC5P13010 732 aaKnown RBP22.24■■□□□ 1.15
CLN3-205ENST00000359984 QARSP47897 775 aaKnown RBP22.24■■□□□ 1.15
CLN3-205ENST00000359984 SARSP49591 514 aaKnown RBP22.24■■□□□ 1.15
CLN3-205ENST00000359984 FLT3LGP49771 235 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 TYRO3Q06418 890 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 UGCGQ16739 394 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 GAS2L3Q86XJ1 694 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 COPS5Q92905 334 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 ZSWIM4Q9H7M6 989 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 MLXIPQ9HAP2 919 aa22.24■■□□□ 1.15
CLN3-205ENST00000359984 ATG7O95352 703 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 PSAPP07602 524 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 CCDC192P0DO97 292 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 CYP2C19P33261 490 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 ADCYAP1R1P41586 468 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 PRKCZQ05513 592 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 PRAMEF19Q5SWL8 479 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 NT5DC1Q5TFE4 455 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 CD99L2Q8TCZ2 262 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 SMARCE1Q969G3 411 aa22.23■■□□□ 1.15
CLN3-205ENST00000359984 ZHX1Q9UKY1 873 aaPredicted RBP22.23■■□□□ 1.15
CLN3-205ENST00000359984 MYMKA6NI61 221 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 BIN1O00499 593 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 ZBTB39O15060 712 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 SMC2O95347 1197 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 SUPT20HL2P0C7V6 817 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 AMPD3Q01432 767 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 DHX37Q8IY37 1157 aaKnown RBP22.22■■□□□ 1.15
CLN3-205ENST00000359984 PIGOQ8TEQ8 1089 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 NACC1Q96RE7 527 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 C7orf25Q9BPX7 421 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.22■■□□□ 1.15
CLN3-205ENST00000359984 GSTTP1A0A1W2PQM5 241 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 EYA4O95677 639 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 SSBP05455 408 aaKnown RBP eCLIP22.22■■□□□ 1.15
CLN3-205ENST00000359984 MYL1P05976 194 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 PTGS1P23219 599 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 SLC12A3P55017 1021 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 PSMC5P62195 406 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 SWSAP1Q6NVH7 229 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 MIS18BP1Q6P0N0 1132 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 TRIM9Q9C026 710 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 TSPY26PQ9H489 355 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 GABBR1Q9UBS5 961 aa22.22■■□□□ 1.15
CLN3-205ENST00000359984 LYPLA2O95372 231 aa22.21■■□□□ 1.15
CLN3-205ENST00000359984 GJC2Q5T442 439 aaPredicted RBP22.21■■□□□ 1.15
CLN3-205ENST00000359984 IQSEC1Q6DN90 963 aa22.21■■□□□ 1.15
CLN3-205ENST00000359984 CCDC60Q8IWA6 550 aaPredicted RBP22.21■■□□□ 1.15
CLN3-205ENST00000359984 MAN1B1Q9UKM7 699 aa22.21■■□□□ 1.15
CLN3-205ENST00000359984 PCNTO95613 3336 aa22.21■■□□□ 1.15
CLN3-205ENST00000359984 IRF5Q13568 498 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 CCDC144BQ3MJ40 725 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 HSDL1Q3SXM5 330 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 ISM2Q6H9L7 571 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 C4orf19Q8IY42 314 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 SYT2Q8N9I0 419 aaPredicted RBP22.2■■□□□ 1.14
CLN3-205ENST00000359984 SEPT1Q8WYJ6 367 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 BHMT2Q9H2M3 363 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 IGKV6D-21A0A0A0MT36 114 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 ZNF865P0CJ78 1059 aaPredicted RBP22.2■■□□□ 1.14
CLN3-205ENST00000359984 SMPD1P17405 629 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 ARHGAP1Q07960 439 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 SPATA33Q96N06 139 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 GSDMAQ96QA5 445 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 GPR20Q99678 358 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 LRRC27Q9C0I9 530 aa22.2■■□□□ 1.14
CLN3-205ENST00000359984 BACH1O14867 736 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 ZNF862O60290 1169 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 GH1P01241 217 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 RPN1P04843 607 aaKnown RBP22.19■■□□□ 1.14
CLN3-205ENST00000359984 CYP11B2P19099 503 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 MAP2K1Q02750 393 aaPredicted RBP22.19■■□□□ 1.14
CLN3-205ENST00000359984 STX1AQ16623 288 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 DUSP28Q4G0W2 176 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 GPBP1Q86WP2 473 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 ATP6V0A1Q93050 837 aa22.19■■□□□ 1.14
CLN3-205ENST00000359984 KLRC4O43908 158 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 FKTNO75072 461 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 NLRP12P59046 1061 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 LAMC2Q13753 1193 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 ARSHQ5FYA8 562 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 CNNM4Q6P4Q7 775 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 DYMQ7RTS9 669 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 ZNF296Q8WUU4 475 aaPredicted RBP22.18■■□□□ 1.14
CLN3-205ENST00000359984 TRIB2Q92519 343 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 DDX12PQ92771 950 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 SRRDQ9UH36 339 aa22.18■■□□□ 1.14
CLN3-205ENST00000359984 NOP56O00567 594 aaKnown RBP22.17■■□□□ 1.14
CLN3-205ENST00000359984 ADCY6O43306 1168 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 BMP6P22004 513 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 HOXD10P28358 340 aa22.17■■□□□ 1.14
CLN3-205ENST00000359984 TCF7P36402 384 aaPredicted RBP22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms