RNA–Protein interactions for RNA: ENST00000358808.6

CLIP1-202, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CLIP1, Length 5,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-202ENST00000358808 ZNF513Q8N8E2 541 aaPredicted RBP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 PAWRQ96IZ0 340 aaKnown RBP10.97□□□□□ -0.65
CLIP1-202ENST00000358808 PCIF1Q9H4Z3 704 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 SNX14Q9Y5W7 946 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 SCINQ9Y6U3 715 aa10.97□□□□□ -0.65
CLIP1-202ENST00000358808 MOCS3O95396 460 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 SRGAP2CP0DJJ0 459 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 MAP2K2P36507 400 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 SKOR1P84550 965 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 DAB2P98082 770 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 SLMAPQ14BN4 828 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 CYP4F22Q6NT55 531 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 CEP170P1Q96L14 293 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 KIAA0232Q92628 1395 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 E9PMD0 336 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 PEX19P40855 299 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 MTERF2Q49AM1 385 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 SGO2Q562F6 1265 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 BTN2A2Q8WVV5 523 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 MAGOHBQ96A72 148 aaKnown RBP10.96□□□□□ -0.65
CLIP1-202ENST00000358808 OTULINQ96BN8 352 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 KIAA1024Q9UPX6 916 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 SLC8A1P32418 973 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 PAPOLAP51003 745 aaKnown RBP10.96□□□□□ -0.65
CLIP1-202ENST00000358808 CHRNDQ07001 517 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 TMED1Q13445 227 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 CCDC85BQ15834 202 aaPredicted RBP10.96□□□□□ -0.65
CLIP1-202ENST00000358808 PNMA1Q8ND90 353 aa10.96□□□□□ -0.65
CLIP1-202ENST00000358808 NAF1Q96HR8 494 aaKnown RBP10.96□□□□□ -0.65
CLIP1-202ENST00000358808 UPF3AQ9H1J1 476 aaKnown RBP10.96□□□□□ -0.65
CLIP1-202ENST00000358808 ALKQ9UM73 1620 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 MYL1P05976 194 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 MARK3P27448 753 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 GABPB1Q06547 395 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 FAM26FQ5R3K3 315 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 DYRK4Q9NR20 520 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 SCOCQ9UIL1 159 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 MID2Q9UJV3 735 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 AOX1Q06278 1338 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 CHL1O00533 1208 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 ZBTB7BO15156 539 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 IREB2P48200 963 aaKnown RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 ZKSCAN8Q15776 578 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 SNCBQ16143 134 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 DALRD3Q5D0E6 543 aaKnown RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 ANKS3Q6ZW76 656 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 TADA2BQ86TJ2 420 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 HSPH1Q92598 858 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 RPF1Q9H9Y2 349 aaKnown RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 SARS2Q9NP81 518 aaKnown RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 LMBRD1Q9NUN5 540 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 TXLNGQ9NUQ3 528 aa10.96□□□□□ -0.66
CLIP1-202ENST00000358808 AFF4Q9UHB7 1163 aaKnown RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 TSR3Q9UJK0 312 aaKnown RBP10.96□□□□□ -0.66
CLIP1-202ENST00000358808 RASGRF2O14827 1237 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 SERPINB2P05120 415 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 LONP1P36776 959 aaKnown RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 FAM182BQ5T319 152 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 TMCO5AQ8N6Q1 288 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 SERPINI1Q99574 410 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 FAM49AQ9H0Q0 323 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 BCL2L12Q9HB09 334 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 INTS9Q9NV88 658 aaKnown RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 STK17AQ9UEE5 414 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 SLC4A7Q9Y6M7 1214 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 CEP170BQ9Y4F5 1589 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 XDHP47989 1333 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 SYCE1LA8MT33 242 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 UBXN8O00124 270 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 PSMC2P35998 433 aaKnown RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 RASSF7Q02833 373 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 EHHADHQ08426 723 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 NFX1Q12986 1120 aaKnown RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 CDO1Q16878 200 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 PPHLN1Q8NEY8 458 aaKnown RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 FBXO41Q8TF61 875 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 SDR42E1Q8WUS8 393 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 TMEM63CQ9P1W3 806 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 L3MBTL1Q9Y468 752 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 ZNF804BA4D1E1 1349 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 FOSP01100 380 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 CAPZA2P47755 286 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 MECOMQ03112 1051 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 OR6B3Q8NGW1 331 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 ULK4Q96C45 1275 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 SLC10A4Q96EP9 437 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 LRRC37BQ96QE4 947 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 DESI2Q9BSY9 194 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 DENND3A2RUS2 1198 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 CFAP69A5D8W1 941 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 E7EWF7 191 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 RPN1P04843 607 aaKnown RBP10.95□□□□□ -0.66
CLIP1-202ENST00000358808 SCN4BQ8IWT1 228 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 URGCPQ8TCY9 931 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 VPS39Q96JC1 886 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 HINFPQ9BQA5 517 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 CASS4Q9NQ75 786 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 JCADQ9P266 1359 aa10.95□□□□□ -0.66
CLIP1-202ENST00000358808 MAP3K15Q6ZN16 1313 aa10.94□□□□□ -0.66
CLIP1-202ENST00000358808 EFCAB8A8MWE9 144 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms