RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 GBP5Q96PP8 586 aa19.46■□□□□ 0.71
COL18A1-202ENST00000355480 KDM5DQ9BY66 1539 aa19.46■□□□□ 0.71
COL18A1-202ENST00000355480 RPS6KA4O75676 772 aa19.46■□□□□ 0.71
COL18A1-202ENST00000355480 TRIM68Q6AZZ1 485 aa19.46■□□□□ 0.71
COL18A1-202ENST00000355480 SAMSN1Q9NSI8 373 aaKnown RBP19.46■□□□□ 0.71
COL18A1-202ENST00000355480 OPHN1O60890 802 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 PLEKHA8P1O95397 391 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 EIF4A3P38919 411 aaKnown RBP19.45■□□□□ 0.7
COL18A1-202ENST00000355480 ARL13BQ3SXY8 428 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 DCAF4Q8WV16 495 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 TCP11Q8WWU5 503 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 PAGE5Q96GU1 130 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 SLITRK6Q9H5Y7 841 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 CPSF2Q9P2I0 782 aaKnown RBP19.45■□□□□ 0.7
COL18A1-202ENST00000355480 FIS1Q9Y3D6 152 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 CXCR5P32302 372 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 ELMSAN1Q6PJG2 1045 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 THNSL1Q8IYQ7 743 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 FAN1Q9Y2M0 1017 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 SERPING1P05155 500 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 AIFM3Q96NN9 605 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 NUDCD1Q96RS6 583 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 SUN1O94901 812 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 TRIM42Q8IWZ5 723 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 GANCQ8TET4 914 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 SPDL1Q96EA4 605 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 PDE11AQ9HCR9 933 aa19.45■□□□□ 0.7
COL18A1-202ENST00000355480 KPNA2P52292 529 aaKnown RBP19.44■□□□□ 0.7
COL18A1-202ENST00000355480 NHEJ1Q9H9Q4 299 aaPredicted RBP19.44■□□□□ 0.7
COL18A1-202ENST00000355480 SFI1A8K8P3 1242 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 JAK3P52333 1124 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 TRIP13Q15645 432 aaPredicted RBP19.44■□□□□ 0.7
COL18A1-202ENST00000355480 FAM83BQ5T0W9 1011 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 DACT3Q96B18 629 aaPredicted RBP19.44■□□□□ 0.7
COL18A1-202ENST00000355480 RCOR1Q9UKL0 485 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 CDO1Q16878 200 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 DGKHQ86XP1 1220 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 SPATS2Q86XZ4 545 aaKnown RBP19.44■□□□□ 0.7
COL18A1-202ENST00000355480 BRIP1Q9BX63 1249 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 NVLO15381 856 aaKnown RBP19.44■□□□□ 0.7
COL18A1-202ENST00000355480 ZMYND10O75800 440 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 MCAMP43121 646 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 HLFQ16534 295 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 ACRBPQ8NEB7 543 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 PYCARDQ9ULZ3 195 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 POLIQ9UNA4 740 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 MAGI2Q86UL8 1455 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 SASH1O94885 1247 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 PCGF5Q86SE9 256 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 RABGGTAQ92696 567 aa19.44■□□□□ 0.7
COL18A1-202ENST00000355480 ZBED6P86452 979 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 AP3B2Q13367 1082 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 MTMR1Q13613 665 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 CCHCR1Q8TD31 782 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 C2orf54Q08AI8 447 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 PDE1CQ14123 709 aaPredicted RBP19.43■□□□□ 0.7
COL18A1-202ENST00000355480 C10orf76Q5T2E6 689 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 SPOPLQ6IQ16 392 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 ERICH1Q86X53 443 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 CFAP36Q96G28 342 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 ZHX2Q9Y6X8 837 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 EPHB4P54760 987 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 STXBP2Q15833 593 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 NDST4Q9H3R1 872 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 PCDHA6Q9UN73 950 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 PCDHA8Q9Y5H6 950 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 MT-ND3P03897 115 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 ENOX1Q8TC92 643 aaKnown RBP19.43■□□□□ 0.7
COL18A1-202ENST00000355480 PIGOQ8TEQ8 1089 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 PBKQ96KB5 322 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 SPTLC3Q9NUV7 552 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 CLASP1Q7Z460 1538 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 CLTAP09496 248 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 SOX5P35711 763 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 RWDD4Q6NW29 188 aaKnown RBP19.43■□□□□ 0.7
COL18A1-202ENST00000355480 PBRM1Q86U86 1689 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 LRRC43Q8N309 656 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 RMDN3Q96TC7 470 aa19.43■□□□□ 0.7
COL18A1-202ENST00000355480 SMIM24O75264 130 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 LDHAP00338 332 aaKnown RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 LRRC63Q05C16 580 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 ZKSCAN8Q15776 578 aaPredicted RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 ARL6IP4Q66PJ3 421 aaKnown RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 TDRD3Q9H7E2 651 aaKnown RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 HOXC10Q9NYD6 342 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 FAM8A1Q9UBU6 413 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 RPAP1Q9BWH6 1393 aaPredicted RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 USP17L5A8MUK1 530 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 HSPA6P17066 643 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 NKX1-1Q15270 411 aaPredicted RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 ZNF667Q5HYK9 610 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 WRNIP1Q96S55 665 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 STRBPQ96SI9 672 aaKnown RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 ZWILCHQ9H900 591 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 RAVER2Q9HCJ3 691 aaKnown RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 SH3GLB2Q9NR46 395 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 ZNF335Q9H4Z2 1342 aaPredicted RBP19.42■□□□□ 0.7
COL18A1-202ENST00000355480 H7C1W4 665 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 ZBED1O96006 694 aa19.42■□□□□ 0.7
COL18A1-202ENST00000355480 CYP2D6P10635 497 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms