RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 RAD54LQ92698 747 aa14.43□□□□□ -0.1
COL18A1-201ENST00000342220 A0A0U1RQJ8 604 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 GOLGA6L9A6NEM1 432 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 PPP1R3GB7ZBB8 358 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 ITGB5P18084 799 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 ERCC5P28715 1186 aaPredicted RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 SREBF1P36956 1147 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 PPP2R3AQ06190 1150 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 TTC31Q49AM3 519 aaPredicted RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 ZNF658Q5TYW1 1059 aaPredicted RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 PPP4R3AQ6IN85 833 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 APTXQ7Z2E3 356 aaKnown RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 IGSF22Q8N9C0 903 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 PPP1R13LQ8WUF5 828 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 ATRIPQ8WXE1 791 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 FGFBP2Q9BYJ0 223 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 SLC38A10Q9HBR0 1119 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 RRP15Q9Y3B9 282 aaKnown RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 RABGAP1Q9Y3P9 1069 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 MRFAP1Q9Y605 127 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 AKR1B15C9JRZ8 316 aaPredicted RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 ATP9AO75110 1047 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 FAM13AO94988 1023 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 IBSPP21815 317 aaPredicted RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 PRPHP41219 470 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 CLK2P49760 499 aaKnown RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 ARID5AQ03989 594 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 RBL2Q08999 1139 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 GPS2Q13227 327 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 PYM1Q9BRP8 204 aaKnown RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 NMRK2Q9NPI5 230 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 KCNJ18B7U540 433 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 CELF2O95319 508 aaKnown RBP14.42□□□□□ -0.1
COL18A1-201ENST00000342220 SOX10P56693 466 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 TRAF1Q13077 416 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 KCNJ12Q14500 433 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 BTNL9Q6UXG8 535 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 NLRX1Q86UT6 975 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 MCF2L2Q86YR7 1114 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 LZTFL1Q9NQ48 299 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 PGAP2Q9UHJ9 254 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 SNCAIPQ9Y6H5 919 aa14.42□□□□□ -0.1
COL18A1-201ENST00000342220 ZNF536O15090 1300 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 ARHGEF35A5YM69 484 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 MARK3P27448 753 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 NPEPPSP55786 919 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 FAM26FQ5R3K3 315 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 SPATA1Q5VX52 437 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 PLA2G4FQ68DD2 849 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 TEKT3Q9BXF9 490 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 LTBP3Q9NS15 1303 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 B4DLN1 442 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 ANKRD40Q6AI12 368 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 RAD9BQ6WBX8 426 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 TEX13BQ9BXU2 312 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 UNC45AQ9H3U1 944 aa14.41□□□□□ -0.1
COL18A1-201ENST00000342220 TAF1DQ9H5J8 278 aaPredicted RBP14.41□□□□□ -0.1
COL18A1-201ENST00000342220 ZCCHC17Q9NP64 241 aaKnown RBP14.41□□□□□ -0.1
COL18A1-201ENST00000342220 NR3C2P08235 984 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 FSTL1Q12841 308 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 DNAJC21Q5F1R6 531 aaKnown RBP14.4□□□□□ -0.1
COL18A1-201ENST00000342220 ARMC9Q7Z3E5 817 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 SH3RF1Q7Z6J0 888 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 SYCP3Q8IZU3 236 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.4□□□□□ -0.16e-9■□□□□ 9.6
COL18A1-201ENST00000342220 PPP1R16BQ96T49 567 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 LXNQ9BS40 222 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 TELO2Q9Y4R8 837 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 DCAF17Q5H9S7 520 aaPredicted RBP14.4□□□□□ -0.1
COL18A1-201ENST00000342220 CNNM4Q6P4Q7 775 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 SRLQ86TD4 932 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 SFR1Q86XK3 245 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 CCDC65Q8IXS2 484 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 FAM212AQ96EL1 285 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 ZSWIM4Q9H7M6 989 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 HOXC10Q9NYD6 342 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 PCDHB13Q9Y5F0 798 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 GLTPD2A6NH11 291 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 CCDC169A6NNP5 214 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 ANKRD13AQ8IZ07 590 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 RUSC1Q9BVN2 902 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 FAM207AQ9NSI2 230 aaPredicted RBP14.4□□□□□ -0.1
COL18A1-201ENST00000342220 KBTBD4Q9NVX7 518 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 USP20Q9Y2K6 914 aa14.4□□□□□ -0.1
COL18A1-201ENST00000342220 SPDYE16A6NNV3 312 aaPredicted RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 POTEB2H3BUK9 544 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 CCDC175P0C221 793 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 FXR2P51116 673 aaKnown RBP eCLIP14.39□□□□□ -0.117e-7■■■■□ 22.2
COL18A1-201ENST00000342220 KRT31Q15323 416 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 ZC2HC1CQ53FD0 456 aaPredicted RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 XKR9Q5GH70 373 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 CCDC155Q8N6L0 562 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 ANKRD13CQ8N6S4 541 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 NT5C3AQ9H0P0 336 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 A1CFQ9NQ94 594 aaKnown RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 ADD3Q9UEY8 706 aaKnown RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 MYH8P13535 1937 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 NKRFO15226 690 aaKnown RBP eCLIP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 SASH3O75995 380 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 TPM1P09493 284 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms