RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 CLIC4Q9Y696 253 aa13.4□□□□□ -0.26
SPTLC1-202ENST00000337841 ARVCFO00192 962 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 F2P00734 622 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 P4HBP07237 508 aaKnown RBP13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 ZNF286BP0CG31 522 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 FXR2P51116 673 aaKnown RBP eCLIP13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 PSMC6P62333 389 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 CEBPZQ03701 1054 aaKnown RBP13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 PTPN11Q06124 597 aaPredicted RBP13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 STK38Q15208 465 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 KIAA0753Q2KHM9 967 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 FOXD4L6Q3SYB3 417 aaPredicted RBP13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 FAM47CQ5HY64 1035 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 NFRKBQ6P4R8 1299 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 FOXD4L3Q6VB84 417 aaPredicted RBP13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 CKAP2LQ8IYA6 745 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 C7orf31Q8N865 590 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 AFAP1L1Q8TED9 768 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 ATP6V0A1Q93050 837 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 LRWD1Q9UFC0 647 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 ZDHHC9Q9Y397 364 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 MAFBQ9Y5Q3 323 aaPredicted RBP13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 EMSYQ7Z589 1322 aa13.39□□□□□ -0.27
SPTLC1-202ENST00000337841 HAS3O00219 553 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 EML1O00423 815 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 GNAT1P11488 350 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 DDIT3P35638 169 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 QARSP47897 775 aaKnown RBP13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 CDK7P50613 346 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 PSMC5P62195 406 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 SLC39A14Q15043 492 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 C1orf53Q5VUE5 145 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 SLC43A3Q8NBI5 491 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 NEK9Q8TD19 979 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 USP28Q96RU2 1077 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 PCYT2Q99447 389 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 CHMP5Q9NZZ3 219 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 MROH7Q68CQ1 1323 aa13.38□□□□□ -0.27
SPTLC1-202ENST00000337841 MYH7BA7E2Y1 1941 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 LRRC37A2A6NM11 1700 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 POTEB3A0JP26 581 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 DCDC2CA8MYV0 355 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 TLR3O15455 904 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 HBP1O60381 514 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 NASPP49321 788 aaPredicted RBP13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 RGS19P49795 217 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 SPIRE1Q08AE8 756 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 PTPAQ15257 358 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 POTEBQ6S5H4 581 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 TRIM50Q86XT4 487 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 CCDC60Q8IWA6 550 aaPredicted RBP13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 TPH2Q8IWU9 490 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 DPF3Q92784 378 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 FAM167AQ96KS9 214 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 EIF2AK1Q9BQI3 630 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 RNPEPQ9H4A4 650 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 ZSWIM4Q9H7M6 989 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 TRPC6Q9Y210 931 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 KIAA0100Q14667 2235 aaKnown RBP13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 KIAA1217Q5T5P2 1943 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 GRIN2DO15399 1336 aa13.37□□□□□ -0.27
SPTLC1-202ENST00000337841 C17orf102A2RUQ5 167 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 VWA3AA6NCI4 1184 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 RRN3P2A6NIE6 340 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 DDX11L8A8MPP1 907 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 SPTLC2O15270 562 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 SLITRK3O94933 977 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 YEATS4O95619 227 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 NCLP19338 710 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 MARK3P27448 753 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 LONP1P36776 959 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 RTP1P59025 263 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 KRT85P78386 507 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 TLE2Q04725 743 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 DNM1Q05193 864 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 PLCB4Q15147 1175 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 LRRC26Q2I0M4 334 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 XKR3Q5GH77 459 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 ZNF484Q5JVG2 852 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 KRT79Q5XKE5 535 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 OTUD6AQ7L8S5 288 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 SESTD1Q86VW0 696 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 IGSF22Q8N9C0 903 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 LINC00301Q8NCQ3 95 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 ATP8B4Q8TF62 1192 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 BBXQ8WY36 941 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 DYDC2Q96IM9 177 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 AK8Q96MA6 479 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 TOX2Q96NM4 488 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 HSD17B14Q9BPX1 270 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 TUFT1Q9NNX1 390 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 RGL1Q9NZL6 768 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 HDAC6Q9UBN7 1215 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 NOD1Q9Y239 953 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 ATP11BQ9Y2G3 1177 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 SRPRBQ9Y5M8 271 aaKnown RBP13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 MORC2Q9Y6X9 1032 aaPredicted RBP13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 NRCAMQ92823 1304 aa13.36□□□□□ -0.27
SPTLC1-202ENST00000337841 POTEMA6NI47 508 aa13.35□□□□□ -0.27
SPTLC1-202ENST00000337841 PPP6R2O75170 966 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms