RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ALKBH5Q6P6C2 394 aaKnown RBP11.08□□□□□ -0.63
CCDC88A-202ENST00000336838 NLRP10Q86W26 655 aa11.08□□□□□ -0.63
CCDC88A-202ENST00000336838 STAMQ92783 540 aa11.08□□□□□ -0.63
CCDC88A-202ENST00000336838 N4BP2L2Q92802 583 aaPredicted RBP11.08□□□□□ -0.63
CCDC88A-202ENST00000336838 STRBPQ96SI9 672 aaKnown RBP11.08□□□□□ -0.63
CCDC88A-202ENST00000336838 EPN3Q9H201 632 aa11.08□□□□□ -0.63
CCDC88A-202ENST00000336838 ZDHHC9Q9Y397 364 aa11.08□□□□□ -0.63
CCDC88A-202ENST00000336838 SSU72P8A0A1W2PR75 194 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 M0QZ92 97 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 CYP2C19P33261 490 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TBCKQ8TEA7 893 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TMEM191BP0C7N4 346 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 POLD1P28340 1107 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 RAB44Q7Z6P3 723 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 PGBD1Q96JS3 809 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 DPH5Q9H2P9 285 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 ZSWIM5Q9P217 1185 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 MXI1P50539 228 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 RCSD1Q6JBY9 416 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 PDCD7Q8N8D1 485 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 OSBP2Q969R2 916 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 DDX27Q96GQ7 796 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 NRBP2Q9NSY0 501 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TXNDC9O14530 226 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 CPP00450 1065 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 PDCD2Q16342 344 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TRMT1LQ7Z2T5 733 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 CCPG1Q9ULG6 757 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 PPP1R12AO14974 1030 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 KRT38O76015 456 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 LDHAP00338 332 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TBXAS1P24557 533 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 ADORA1P30542 326 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 BTDP43251 543 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 PLTPP55058 493 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 ABCB5Q2M3G0 1257 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 FSCBQ5H9T9 825 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 FRMD5Q7Z6J6 570 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 LY9Q9HBG7 655 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TFCP2L1Q9NZI6 479 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 SGK1O00141 431 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 SERPINB4P48594 390 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 POLGP54098 1239 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 HNRNPH2P55795 449 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 ANKRD36BP1Q96IX9 119 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 FAM20AQ96MK3 541 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 LRRC37BQ96QE4 947 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TRIM55Q9BYV6 548 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 PLA2G4BP0C869 781 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 GGCXP38435 758 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 TRIM28Q13263 835 aaKnown RBP11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 KIFC3Q9BVG8 833 aa11.08□□□□□ -0.64
CCDC88A-202ENST00000336838 YARSP54577 528 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 FAM133AQ8N9E0 248 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 GIMAP8Q8ND71 665 aaPredicted RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 TCP11Q8WWU5 503 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 SHPRHQ149N8 1683 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 PSMD14O00487 310 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 ORC4O43929 436 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 GSDMBQ8TAX9 411 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 SLC7A3Q8WY07 619 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 GCOM2Q9BZD3 368 aaPredicted RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 CYP26B1Q9NR63 512 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 LIMA1Q9UHB6 759 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 BAG5Q9UL15 447 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 NFU1Q9UMS0 254 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 KIAA0391O15091 583 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 SNRPFP62306 86 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 PDIA5Q14554 519 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 TEX9Q8N6V9 391 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 TLR7Q9NYK1 1049 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 SUGT1Q9Y2Z0 365 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 CRB1P82279 1406 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 IQCB1Q15051 598 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 XKR9Q5GH70 373 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 FAM160B2Q86V87 743 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 SASH1O94885 1247 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 FGGP02679 453 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 SLFN13Q68D06 897 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 KLC3Q6P597 504 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 PCDHB6Q9Y5E3 794 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 DNAJC24Q6P3W2 148 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 CRLF3Q8IUI8 442 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 DHX38Q92620 1227 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 GJA10Q969M2 543 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 FAF1Q9UNN5 650 aaPredicted RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 ARL4CP56559 192 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 BYSLQ13895 437 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 CCSER1Q9C0I3 900 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 ADD3Q9UEY8 706 aaKnown RBP11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 ATP8B3O60423 1300 aa11.07□□□□□ -0.64
CCDC88A-202ENST00000336838 F8W8V4 182 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 ATP1A3P13637 1013 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 CABLES1Q8TDN4 633 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 CHMP6Q96FZ7 201 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 TMEM131LA2VDJ0 1609 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 UBN2Q6ZU65 1347 aa11.06□□□□□ -0.64
CCDC88A-202ENST00000336838 MYCLP12524 364 aaPredicted RBP11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms