RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 SLC8A1P32418 973 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 TMED1Q13445 227 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 DCAF4L1Q3SXM0 396 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 NLGN1Q8N2Q7 840 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 ZNF341Q9BYN7 854 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 MAN1B1Q9UKM7 699 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 DPCR1Q3MIW9 517 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 SLC10A4Q96EP9 437 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 TM6SF1Q9BZW5 370 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 ZBTB1Q9Y2K1 713 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 ZNF233A6NK53 670 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 PSAPP07602 524 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 GAP43P17677 238 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 EFCAB13Q8IY85 973 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 TRIML1Q8N9V2 468 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 MARCH10Q8NA82 808 aaPredicted RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 CEP19Q96LK0 163 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 AFF4Q9UHB7 1163 aaKnown RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 NUP160Q12769 1436 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 CARMIL3Q8ND23 1372 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 NEMP1O14524 444 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 ZBED1O96006 694 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 PEX3P56589 373 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 C11orf57Q6ZUT1 292 aaPredicted RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 PIGOQ8TEQ8 1089 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 FAF2Q96CS3 445 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 NGRNQ9NPE2 291 aaKnown RBP13.59□□□□□ -0.23
SDC3-201ENST00000336798 GDAQ9Y2T3 454 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 PTPRKQ15262 1439 aa13.59□□□□□ -0.23
SDC3-201ENST00000336798 EXOC1LA0A1B0GW35 172 aa13.58□□□□□ -0.23
SDC3-201ENST00000336798 SEMA3EO15041 775 aa13.58□□□□□ -0.23
SDC3-201ENST00000336798 ACSL3O95573 720 aa13.58□□□□□ -0.23
SDC3-201ENST00000336798 SRP68Q9UHB9 627 aaKnown RBP13.58□□□□□ -0.23
SDC3-201ENST00000336798 WDR17Q8IZU2 1322 aa13.58□□□□□ -0.23
SDC3-201ENST00000336798 EIF3CLB5ME19 914 aaKnown RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 PSMA2P25787 234 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 CDC37Q16543 378 aaPredicted RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 SLC27A3Q5K4L6 730 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 GPATCH4Q5T3I0 446 aaKnown RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 EIF3CQ99613 913 aaKnown RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 EIF4A3P38919 411 aaKnown RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 TRIM11Q96F44 468 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 SAMSN1Q9NSI8 373 aaKnown RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 EXOC8Q8IYI6 725 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 EDEM3Q9BZQ6 932 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 NHEJ1Q9H9Q4 299 aaPredicted RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 EMILIN3Q9NT22 766 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 CCDC195A0A1B0GUA6 201 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 LUC7L3O95232 432 aaKnown RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 PLA2G4BP0C869 781 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 RBM6P78332 1123 aaKnown RBP13.58□□□□□ -0.24
SDC3-201ENST00000336798 STK17AQ9UEE5 414 aa13.58□□□□□ -0.24
SDC3-201ENST00000336798 ATP10BO94823 1461 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 ZNF500O60304 480 aaPredicted RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 MXD4Q14582 209 aaPredicted RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 GLE1Q53GS7 698 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 RUNDC3BQ96NL0 473 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 SPZ1Q9BXG8 430 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 GOLGA8QA0A0J9YX86 632 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 GOLGA8OA6NCC3 632 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 GOLGA8NF8WBI6 632 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 ETF1P62495 437 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 CCDC92Q53HC0 331 aaPredicted RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 CATSPER4Q7RTX7 472 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 NOVA2Q9UNW9 492 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 ITSN2Q9NZM3 1697 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 CREB3O43889 395 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 CTNND1O60716 968 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 PLCG1P19174 1290 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 ACCSLQ4AC99 568 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 UNC5CLQ8IV45 518 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.57□□□□□ -0.24
SDC3-201ENST00000336798 TMEM206Q9H813 350 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 DBNLQ9UJU6 430 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 PGRMC1O00264 195 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 ZNF658Q5TYW1 1059 aaPredicted RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 CC2D2BQ6DHV5 1058 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 KRT80Q6KB66 452 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 RBM46Q8TBY0 533 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 AFG1LQ8WV93 481 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 HEMGNQ9BXL5 484 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 SLC4A7Q9Y6M7 1214 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 EEF1DP29692 281 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 APOA5Q6Q788 366 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 WDR11Q9BZH6 1224 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 PUS7LQ9H0K6 701 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 PARVGQ9HBI0 331 aa13.57□□□□□ -0.24
SDC3-201ENST00000336798 MRPL47Q9HD33 250 aaKnown RBP13.57□□□□□ -0.24
SDC3-201ENST00000336798 MYL1P05976 194 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 MXI1P50539 228 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 DRP2Q13474 957 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 ARL13BQ3SXY8 428 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 ATG16L1Q676U5 607 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 SSH3Q8TE77 659 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 SERPINB13Q9UIV8 391 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 CAPN11Q9UMQ6 739 aa13.56□□□□□ -0.24
SDC3-201ENST00000336798 IREB2P48200 963 aaKnown RBP13.56□□□□□ -0.24
SDC3-201ENST00000336798 VCPP55072 806 aaKnown RBP13.56□□□□□ -0.24
SDC3-201ENST00000336798 HNRNPH2P55795 449 aaKnown RBP13.56□□□□□ -0.24
SDC3-201ENST00000336798 CYP27A1Q02318 531 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms