RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 SGSM2O43147 1006 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 RASA4O43374 803 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 KRT16P08779 473 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SMARCA1P28370 1054 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CCDC142Q17RM4 750 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CC2D1AQ6P1N0 951 aaPredicted RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SRLQ86TD4 932 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 AGGF1Q8N302 714 aaeCLIP6.61□□□□□ -1.352e-8■■■■■ 37.2
CSMD1-201ENST00000335551 ZFYVE19Q96K21 471 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SIKE1Q9BRV8 207 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 MOV10L1Q9BXT6 1211 aaKnown RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SPTLC3Q9NUV7 552 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PYCARDQ9ULZ3 195 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 COL4A3BPQ9Y5P4 624 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 KDM5BQ9UGL1 1544 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PDCLQ13371 301 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 INAQ16352 499 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 KIRREL3Q8IZU9 778 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 DEPTORQ8TB45 409 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CCDC134Q9H6E4 229 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 FANCEQ9HB96 536 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 ABCB6Q9NP58 842 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 DUOX2Q9NRD8 1548 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 B4E1Z4 1266 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 NFKBIAP25963 317 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PTK2Q05397 1052 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 NAA35Q5VZE5 725 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SCYL2Q6P3W7 929 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 FRA10AC1Q70Z53 315 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 XAGE3Q8WTP9 111 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PANK4Q9NVE7 773 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 WDR91A4D1P6 747 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 GOLGA8IPA6NC78 632 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 COPS2P61201 443 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 RINLQ6ZS11 566 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 IFNL2Q8IZJ0 200 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 ATP6V1G3Q96LB4 118 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 EPN3Q9H201 632 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 ZFYVE1Q9HBF4 777 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 ABCF3Q9NUQ8 709 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PDE5AO76074 875 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 GRM1Q13255 1194 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 LAMC2Q13753 1193 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CYTH1Q15438 398 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 TMC5Q6UXY8 1006 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 ZBTB8OSQ8IWT0 167 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 NELFCDQ8IXH7 590 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SNX19Q92543 992 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 OMA1Q96E52 524 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 EIF4G3O43432 1585 aaKnown RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 GRID2IPA4D2P6 1211 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SMCO2A6NFE2 343 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PJA2O43164 708 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 TOM1O60784 492 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 ZNF189O75820 626 aaPredicted RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 POLR2FP61218 127 aaKnown RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 MESDQ14696 234 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SFMBT1Q9UHJ3 866 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 MEIS1O00470 390 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 MOCS3O95396 460 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 KRT6AP02538 564 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 KRT6BP04259 564 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CDC27P30260 824 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 RFC4P35249 363 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SLC1A4P43007 532 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 KRT6CP48668 564 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CDH24Q86UP0 819 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 VCPP55072 806 aaKnown RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 DNAJC9Q8WXX5 260 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 NDEL1Q9GZM8 345 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 GPCPD1Q9NPB8 672 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 OLFML3Q9NRN5 406 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 DENND2AQ9ULE3 1009 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 STRNO43815 780 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 OR52Z1P0C646 297 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 GNL1P36915 607 aaPredicted RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 NLRP11P59045 1033 aaKnown RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 TFCP2Q12800 502 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 PTPROQ16827 1216 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CNOT6LQ96LI5 555 aaKnown RBP6.61□□□□□ -1.35
CSMD1-201ENST00000335551 AGBL1Q96MI9 1066 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 CCT7Q99832 543 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 SYTL2Q9HCH5 934 aa6.61□□□□□ -1.35
CSMD1-201ENST00000335551 TBKBP1A7MCY6 615 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 KRT1P04264 644 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 S100A9P06702 114 aaKnown RBP6.6□□□□□ -1.35
CSMD1-201ENST00000335551 DSG1Q02413 1049 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 HIC1Q14526 733 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 DNAL1Q4LDG9 190 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 VSTM4Q8IW00 320 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 SNX14Q9Y5W7 946 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 MAP3K5Q99683 1374 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 DARS2Q6PI48 645 aaKnown RBP6.6□□□□□ -1.35
CSMD1-201ENST00000335551 DYMQ7RTS9 669 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 TNIP2Q8NFZ5 429 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 FOXP2O15409 715 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 SEC24BO95487 1268 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 ACADSP16219 412 aa6.6□□□□□ -1.35
CSMD1-201ENST00000335551 PSMA4P25789 261 aaKnown RBP6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms