RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CYP4F22Q6NT55 531 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 METTL23Q86XA0 190 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 EFCC1Q9HA90 598 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 ABCF3Q9NUQ8 709 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 INPP5FQ9Y2H2 1132 aa11.03□□□□□ -0.64
CHD3-201ENST00000330494 UNC13BO14795 1591 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 POTEB3A0JP26 581 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 POTECB2RU33 542 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 ZBTB5O15062 677 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 GSTA1P08263 222 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 GSTA2P09210 222 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 TXNRD1Q16881 649 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 POTEBQ6S5H4 581 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 CACNA2D3Q8IZS8 1091 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 PDE11AQ9HCR9 933 aa11.02□□□□□ -0.64
CHD3-201ENST00000330494 BNIP3LO60238 219 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 TCP1P17987 556 aaKnown RBP11.02□□□□□ -0.65
CHD3-201ENST00000330494 EEF1GP26641 437 aaKnown RBP11.02□□□□□ -0.65
CHD3-201ENST00000330494 ZSCAN26Q16670 478 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 PRAMEF18Q5VWM3 479 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 TMEM206Q9H813 350 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 TBK1Q9UHD2 729 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 POTEFA5A3E0 1075 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 POTEIP0CG38 1075 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 ACTN1P12814 892 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 SGO2Q562F6 1265 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 RESP18Q5W5W9 173 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 POTEGQ6S5H5 508 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 POTEEQ6S8J3 1075 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 CYFIP1Q7L576 1253 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 FAM84BQ96KN1 310 aaPredicted RBP11.02□□□□□ -0.65
CHD3-201ENST00000330494 TACO1Q9BSH4 297 aaKnown RBP11.02□□□□□ -0.65
CHD3-201ENST00000330494 PCDHA13Q9Y5I0 950 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 GSG1L2A8MUP6 293 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 GBP7Q8N8V2 638 aaPredicted RBP11.02□□□□□ -0.65
CHD3-201ENST00000330494 MARCH10Q8NA82 808 aaPredicted RBP11.02□□□□□ -0.65
CHD3-201ENST00000330494 MICAL1Q8TDZ2 1067 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 TULP4Q9NRJ4 1543 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 UTYO14607 1347 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 GUCY1A2P33402 732 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 ANKRD20A3Q5VUR7 823 aa11.02□□□□□ -0.65
CHD3-201ENST00000330494 F5H423 210 aaPredicted RBP11.01□□□□□ -0.65
CHD3-201ENST00000330494 MXI1P50539 228 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 KRT31Q15323 416 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 PFKFB3Q16875 520 aaPredicted RBP11.01□□□□□ -0.65
CHD3-201ENST00000330494 FIS1Q9Y3D6 152 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 SLC16A4O15374 487 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 SLCO1A2P46721 670 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 PPP4R1Q8TF05 950 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 DCAF4Q8WV16 495 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 P3H4Q92791 437 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 ATP8A1Q9Y2Q0 1164 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 PLTPP55058 493 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 DNAJC24Q6P3W2 148 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.01□□□□□ -0.65
CHD3-201ENST00000330494 CFAP36Q96G28 342 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 SH2D3AQ9BRG2 576 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 ISCA1Q9BUE6 129 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 EFCAB8A8MWE9 144 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 PNMA2Q9UL42 364 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 CDC25BP30305 580 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 CRB1P82279 1406 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 SFR1Q86XK3 245 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 MCUQ8NE86 351 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 CDHR1Q96JP9 859 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 MKRN1Q9UHC7 482 aaKnown RBP11.01□□□□□ -0.65
CHD3-201ENST00000330494 ZBTB12Q9Y330 459 aaPredicted RBP11.01□□□□□ -0.65
CHD3-201ENST00000330494 PASKQ96RG2 1323 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 POLIQ9UNA4 740 aa11.01□□□□□ -0.65
CHD3-201ENST00000330494 NPHP3-ACAD11A0A0J9YXS1 232 aa11□□□□□ -0.65
CHD3-201ENST00000330494 ARHGAP42A6NI28 874 aa11□□□□□ -0.65
CHD3-201ENST00000330494 SH2D4BQ5SQS7 431 aa11□□□□□ -0.65
CHD3-201ENST00000330494 DARS2Q6PI48 645 aaKnown RBP11□□□□□ -0.65
CHD3-201ENST00000330494 LINC00116Q8NCU8 138 aa11□□□□□ -0.65
CHD3-201ENST00000330494 NDST4Q9H3R1 872 aa11□□□□□ -0.65
CHD3-201ENST00000330494 PRCPP42785 496 aa11□□□□□ -0.65
CHD3-201ENST00000330494 BASP1P80723 227 aaKnown RBP11□□□□□ -0.65
CHD3-201ENST00000330494 OR6B3Q8NGW1 331 aa11□□□□□ -0.65
CHD3-201ENST00000330494 LRRC4Q9HBW1 653 aa11□□□□□ -0.65
CHD3-201ENST00000330494 XPOTO43592 962 aaKnown RBP11□□□□□ -0.65
CHD3-201ENST00000330494 DMTNQ08495 405 aa11□□□□□ -0.65
CHD3-201ENST00000330494 PRPSAP1Q14558 356 aa11□□□□□ -0.65
CHD3-201ENST00000330494 BRD3Q15059 726 aa11□□□□□ -0.65
CHD3-201ENST00000330494 SWSAP1Q6NVH7 229 aa11□□□□□ -0.65
CHD3-201ENST00000330494 DSTYKQ6XUX3 929 aa11□□□□□ -0.65
CHD3-201ENST00000330494 RHPN2Q8IUC4 686 aa11□□□□□ -0.65
CHD3-201ENST00000330494 MB21D1Q8N884 522 aa11□□□□□ -0.65
CHD3-201ENST00000330494 F5H6K3 240 aa11□□□□□ -0.65
CHD3-201ENST00000330494 AKR1B1P15121 316 aa11□□□□□ -0.65
CHD3-201ENST00000330494 CCNE1P24864 410 aa11□□□□□ -0.65
CHD3-201ENST00000330494 BPIFB4P59827 614 aa11□□□□□ -0.65
CHD3-201ENST00000330494 KLRC3Q07444 240 aa11□□□□□ -0.65
CHD3-201ENST00000330494 CCDC170Q8IYT3 715 aa11□□□□□ -0.65
CHD3-201ENST00000330494 PRPF38AQ8NAV1 312 aaKnown RBP11□□□□□ -0.65
CHD3-201ENST00000330494 TPX2Q9ULW0 747 aaKnown RBP11□□□□□ -0.65
CHD3-201ENST00000330494 IKBKBO14920 756 aa11□□□□□ -0.65
CHD3-201ENST00000330494 TDP2O95551 362 aa11□□□□□ -0.65
CHD3-201ENST00000330494 PLCB4Q15147 1175 aa11□□□□□ -0.65
CHD3-201ENST00000330494 C2orf69Q8N8R5 385 aa11□□□□□ -0.65
CHD3-201ENST00000330494 FAM213AQ9BRX8 229 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms