RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 LSAMPQ13449 338 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 OLFML2BQ68BL8 750 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 TRIM50Q86XT4 487 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 NEK9Q8TD19 979 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 NCSTNQ92542 709 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 OSBP2Q969R2 916 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 ZNF653Q96CK0 615 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 HIC2Q96JB3 615 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 MTFR1LQ9H019 292 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 PLCB1Q9NQ66 1216 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 SEC31BQ9NQW1 1179 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 TMOD3Q9NYL9 352 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 NFS1Q9Y697 457 aa12.9□□□□□ -0.34
SHMT2-201ENST00000328923 A0A0J9YVX5 310 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 ASAP2O43150 1006 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 WFS1O76024 890 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 IFIT1P09914 478 aaKnown RBP12.89□□□□□ -0.35
SHMT2-201ENST00000328923 TPBGLP0DKB5 382 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 HSD17B3P37058 310 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 NLRP5P59047 1200 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 COPS2P61201 443 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 MAP7D1Q3KQU3 841 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 C14orf80Q86SX3 495 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF554Q86TJ5 538 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 LRRC34Q8IZ02 419 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 AGBL1Q96MI9 1066 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 NR1H4Q96RI1 486 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-201ENST00000328923 SRPK1Q96SB4 655 aaKnown RBP12.89□□□□□ -0.35
SHMT2-201ENST00000328923 TIPINQ9BVW5 301 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 RAB17Q9H0T7 212 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 CIDEBQ9UHD4 219 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 SERTAD1Q9UHV2 236 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF180Q9UJW8 692 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 PNMA3Q9UL41 463 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 IQSEC3Q9UPP2 1182 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-201ENST00000328923 DAAM1Q9Y4D1 1078 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 NUP188Q5SRE5 1749 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 POLR2DO15514 142 aaKnown RBP12.89□□□□□ -0.35
SHMT2-201ENST00000328923 COBLO75128 1261 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 PEX11AO75192 247 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 FGAP02671 866 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 HOXD11P31277 338 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-201ENST00000328923 IL15P40933 162 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-201ENST00000328923 CASP7P55210 303 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 BIRC3Q13489 604 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 RCN2Q14257 317 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 TMEM53Q6P2H8 277 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 ATG9AQ7Z3C6 839 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 NOSTRINQ8IVI9 506 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 WDR60Q8WVS4 1066 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 FAM192AQ9GZU8 254 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 SAMD15Q9P1V8 674 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 INTUQ9ULD6 942 aa12.89□□□□□ -0.35
SHMT2-201ENST00000328923 ITGB4P16144 1822 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 ATP5J2-PTCD1G3V325 749 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 HSPA9P38646 679 aaKnown RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 PTDSS1P48651 473 aaKnown RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 GSTM4Q03013 218 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 UAP1Q16222 522 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 MUM1Q2TAK8 710 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 RILPL1Q5EBL4 403 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF280DQ6N043 979 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 LRIG3Q6UXM1 1119 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 STAG2Q8N3U4 1231 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 RNF10Q8N5U6 811 aaKnown RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 WASF1Q92558 559 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 TRIM11Q96F44 468 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 ABHD8Q96I13 439 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 AIFM3Q96NN9 605 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 SPATA16Q9BXB7 569 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 PUS3Q9BZE2 481 aaKnown RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 LRRC4CQ9HCJ2 640 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 TRPV5Q9NQA5 729 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 ARHGEF38Q9NXL2 777 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 SLC4A7Q9Y6M7 1214 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 NID2Q14112 1375 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 SH2B2O14492 632 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 YY1P25490 414 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF131P52739 623 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 GALNTL6Q49A17 601 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 ZNF362Q5T0B9 420 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 ASAP3Q8TDY4 903 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 STK32AQ8WU08 396 aa12.88□□□□□ -0.35
SHMT2-201ENST00000328923 R3HDM2Q9Y2K5 976 aaKnown RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 SRPRBQ9Y5M8 271 aaKnown RBP12.88□□□□□ -0.35
SHMT2-201ENST00000328923 SPATA31A1Q5TZJ5 1347 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 H0Y3Z8 333 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 ASLP04424 464 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 ITGA2BP08514 1039 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 CTNNA1P35221 906 aaKnown RBP12.87□□□□□ -0.35
SHMT2-201ENST00000328923 SPAG1Q07617 926 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 BNIP1Q12981 228 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 NTRK3Q16288 839 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 RC3H1Q5TC82 1133 aaKnown RBP12.87□□□□□ -0.35
SHMT2-201ENST00000328923 ASRGL1Q7L266 308 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 EXOC8Q8IYI6 725 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 PIGBQ92521 554 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 DDX23Q9BUQ8 820 aaKnown RBP12.87□□□□□ -0.35
SHMT2-201ENST00000328923 VPS16Q9H269 839 aa12.87□□□□□ -0.35
SHMT2-201ENST00000328923 LIMA1Q9UHB6 759 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms