RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 OXER1Q8TDS5 423 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 OTUD5Q96G74 571 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 DNAJC18Q9H819 358 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 EHMT1Q9H9B1 1298 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 DUOX1Q9NRD9 1551 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 PALM3A6NDB9 673 aaPredicted RBP11.94□□□□□ -0.5
LSM3-201ENST00000306024 GLTPD2A6NH11 291 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 KRT14P02533 472 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 HMGCS2P54868 508 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 MKRN3Q13064 507 aaKnown RBP11.94□□□□□ -0.5
LSM3-201ENST00000306024 GKAP1Q5VSY0 366 aaPredicted RBP11.94□□□□□ -0.5
LSM3-201ENST00000306024 MAP1SQ66K74 1059 aaPredicted RBP11.94□□□□□ -0.5
LSM3-201ENST00000306024 CCDC63Q8NA47 563 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 ANKS1AQ92625 1134 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 SLC10A4Q96EP9 437 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 MAP3K14Q99558 947 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 GLIS2Q9BZE0 524 aaPredicted RBP11.94□□□□□ -0.5
LSM3-201ENST00000306024 CCDC113Q9H0I3 377 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 ARAP2Q8WZ64 1704 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 ZBTB5O15062 677 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 ZNF185O15231 689 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 PPP6R2O75170 966 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 VEGFAP15692 232 aaPredicted RBP11.94□□□□□ -0.5
LSM3-201ENST00000306024 QRICH1Q2TAL8 776 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 GLT8D2Q9H1C3 349 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 CCPG1Q9ULG6 757 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 PCDHA4Q9UN74 947 aa11.94□□□□□ -0.5
LSM3-201ENST00000306024 GOLGA6L10A0A0M3HER8 536 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 EIF4E1BA6NMX2 242 aaKnown RBP11.93□□□□□ -0.5
LSM3-201ENST00000306024 GCOM1H8Y6P7 765 aaPredicted RBP11.93□□□□□ -0.5
LSM3-201ENST00000306024 MYZAPP0CAP1 466 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 RNASE9P60153 205 aaKnown RBP11.93□□□□□ -0.5
LSM3-201ENST00000306024 PSMD2Q13200 908 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 TMEM266Q2M3C6 531 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 GPIHBP1Q8IV16 184 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 SPAG5Q96R06 1193 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 ELP3Q9H9T3 547 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 CCDC189A1A4V9 331 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 KIF28PB7ZC32 967 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 ERCC5P28715 1186 aaPredicted RBP11.93□□□□□ -0.5
LSM3-201ENST00000306024 UBA7P41226 1012 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 NR1I3Q14994 352 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 GALNT17Q6IS24 598 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 TATDN1Q6P1N9 297 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 EMBQ6PCB8 327 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 FAM160B2Q86V87 743 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 RPUSD2Q8IZ73 545 aaKnown RBP11.93□□□□□ -0.5
LSM3-201ENST00000306024 TRIML1Q8N9V2 468 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 ABHD10Q9NUJ1 306 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 BACH1O14867 736 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 CCNT1O60563 726 aaKnown RBP11.93□□□□□ -0.5
LSM3-201ENST00000306024 CXCR5P32302 372 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 RWDD2BP57060 319 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 SCYL3Q8IZE3 742 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 RNPC3Q96LT9 517 aaKnown RBP11.93□□□□□ -0.5
LSM3-201ENST00000306024 UIMC1Q96RL1 719 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 PAGR1Q9BTK6 254 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 RRAGCQ9HB90 399 aa11.93□□□□□ -0.5
LSM3-201ENST00000306024 CCNHP51946 323 aaPredicted RBP11.92□□□□□ -0.5
LSM3-201ENST00000306024 TRIM68Q6AZZ1 485 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 USP50Q70EL3 339 aaPredicted RBP11.92□□□□□ -0.5
LSM3-201ENST00000306024 ZNF280CQ8ND82 737 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 TAF4BQ92750 862 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 RAB34Q9BZG1 259 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 BARHL2Q9NY43 387 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 A0A1B0GTH6 734 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 SMIM24O75264 130 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 AP1G2O75843 785 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 NEFHP12036 1026 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 APBA1Q02410 837 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 GUCY2DQ02846 1103 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 RESP18Q5W5W9 173 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 CCDC47Q96A33 483 aaKnown RBP11.92□□□□□ -0.5
LSM3-201ENST00000306024 TRIM47Q96LD4 638 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 PPP2R3BQ9Y5P8 575 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 UBE2SQ16763 222 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 NSMCE1Q8WV22 266 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 CHP1Q99653 195 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 FBXO28Q9NVF7 368 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 DDX20Q9UHI6 824 aaKnown RBP11.92□□□□□ -0.5
LSM3-201ENST00000306024 TFR2Q9UP52 801 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 TMX2Q9Y320 296 aa11.92□□□□□ -0.5
LSM3-201ENST00000306024 MRPL11Q9Y3B7 192 aaKnown RBP11.92□□□□□ -0.5
LSM3-201ENST00000306024 SHOX2O60902 331 aaPredicted RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 PRELPP51888 382 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 GNPTABQ3T906 1256 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 UBLCP1Q8WVY7 318 aaPredicted RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 SELENOSQ9BQE4 189 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 LRRC1Q9BTT6 524 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 JMJD4Q9H9V9 463 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 NRXN2Q9P2S2 1712 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 MYBL2P10244 700 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 PCK1P35558 622 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 MTIF2P46199 727 aaKnown RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 TDRD12Q587J7 1177 aaKnown RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 DTHD1Q6ZMT9 781 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 TBC1D1Q86TI0 1168 aaPredicted RBP11.91□□□□□ -0.5
LSM3-201ENST00000306024 C2orf69Q8N8R5 385 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 MYCBPAPQ8TBZ2 947 aa11.91□□□□□ -0.5
LSM3-201ENST00000306024 SMCR8Q8TEV9 937 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms