RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 DNAJC24Q6P3W2 148 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 APOA5Q6Q788 366 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 LINC00116Q8NCU8 138 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 CAPN10Q9HC96 672 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 FAM114A2Q9NRY5 505 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 CLDN3O15551 220 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 IVLP07476 585 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 ASNSP08243 561 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 TXNP10599 105 aaKnown RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 OR1G1P47890 313 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 MKRN4PQ13434 485 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 POTEDQ86YR6 584 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 ADGRF4Q8IZF3 695 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 USP33Q8TEY7 942 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 MAGOHBQ96A72 148 aaKnown RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PPP1R36Q96LQ0 422 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 TUBGCP2Q9BSJ2 902 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 GCNT4Q9P109 453 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 CALCOCO1Q9P1Z2 691 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 GNAT1P11488 350 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 GMPSP49915 693 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 ZNF449Q6P9G9 518 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 TAOK1Q7L7X3 1001 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 DEFB128Q7Z7B8 93 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 SEPT5Q99719 369 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 DHX36Q9H2U1 1008 aaKnown RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 INSRP06213 1382 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 EBAG9O00559 213 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PRPSAP2O60256 369 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 TADA2AO75478 443 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 TOM1L1O75674 476 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PDGFRBP09619 1106 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 GPC3P51654 580 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 YWHAHQ04917 246 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 ARHGEF18Q6ZSZ5 1173 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 TMEM63CQ9P1W3 806 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 KIAA1468Q9P260 1216 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 TSKSQ9UJT2 592 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 CAVIN2O95810 425 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 CPP00450 1065 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 COPB1P53618 953 aaKnown RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 ATP11AP98196 1134 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 MXD4Q14582 209 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 LRRC71Q8N4P6 559 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PDZD8Q8NEN9 1154 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 SPDL1Q96EA4 605 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 ATXN7L3BQ96GX2 97 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PP2D1A8MPX8 630 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PCK1P35558 622 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 GCLMP48507 274 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 STAG2Q8N3U4 1231 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 HASPINQ8TF76 798 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 MAGEB10Q96LZ2 347 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 MRPL46Q9H2W6 279 aaKnown RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 ZSWIM6Q9HCJ5 1215 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PIK3C2GO75747 1445 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 PNMA6FA0A0J9YX94 578 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 WDR64B1ANS9 1081 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 DFFAO00273 331 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 RGS16O15492 202 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 FOSP01100 380 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 APOBEC3FQ8IUX4 373 aaKnown RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 OXER1Q8TDS5 423 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 L3MBTL3Q96JM7 780 aaPredicted RBP8.43□□□□□ -1.06
SCN9A-201ENST00000303354 NARFQ9UHQ1 456 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 MAN1B1Q9UKM7 699 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 DOLKQ9UPQ8 538 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 SPATA31A3Q5VYP0 1347 aa8.43□□□□□ -1.06
SCN9A-201ENST00000303354 POLRMTO00411 1230 aaKnown RBP8.42□□□□□ -1.06
SCN9A-201ENST00000303354 KITP10721 976 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 TMEM179Q6ZVK1 233 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 TMTC1Q8IUR5 882 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 KIF12Q96FN5 646 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 ADAM33Q9BZ11 813 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 LSG1Q9H089 658 aaKnown RBP8.42□□□□□ -1.06
SCN9A-201ENST00000303354 BLMP54132 1417 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-201ENST00000303354 CCL15-CCL14A0A0B4J2E2 113 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 TRIM49BA6NDI0 452 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 NDUFAB1O14561 156 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 PMLP29590 882 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 TTLL4Q14679 1199 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 CCL15Q16663 113 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 ANKRD20A3Q5VUR7 823 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 TMEM143Q96AN5 459 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 ZFYVE28Q9HCC9 887 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 KLHL11Q9NVR0 708 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 CLCA2Q9UQC9 943 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 TAL1P17542 331 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-201ENST00000303354 LMNB1P20700 586 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 ERICH1Q86X53 443 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 PARVGQ9HBI0 331 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 LRRD1A4D1F6 860 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 CYP19A1P11511 503 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-201ENST00000303354 RECQLP46063 649 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-201ENST00000303354 FAM160B2Q86V87 743 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 GINM1Q9NU53 330 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 UBA6A0AVT1 1052 aaPredicted RBP8.42□□□□□ -1.06
SCN9A-201ENST00000303354 F5H6K3 240 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 AKR1B1P15121 316 aa8.42□□□□□ -1.06
SCN9A-201ENST00000303354 MX2P20592 715 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms