RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 PGM5Q15124 567 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 QPCTQ16769 361 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 ZNF792Q3KQV3 632 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 PRAMEF19Q5SWL8 479 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 ANO1Q5XXA6 986 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 CYP2W1Q8TAV3 490 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 RNF217Q8TC41 542 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 TBCKQ8TEA7 893 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 CCDC12Q8WUD4 166 aaPredicted RBP7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 TRIB2Q92519 343 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 KCTD15Q96SI1 283 aaPredicted RBP7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 APBA2Q99767 749 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 TMEM60Q9H2L4 133 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 MROH8Q9H579 483 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 BCAS3Q9H6U6 928 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 SH3GLB2Q9NR46 395 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 PXMP2Q9NR77 195 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 SAGE1Q9NXZ1 904 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 RTEL1Q9NZ71 1219 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 GJD2Q9UKL4 321 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 TRIM17Q9Y577 477 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 IVNS1ABPQ9Y6Y0 642 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 FRMPD4Q14CM0 1322 aa7.4□□□□□ -1.22
DEPDC4-201ENST00000299185 DOCK3Q8IZD9 2030 aa7.4□□□□□ -1.23
DEPDC4-201ENST00000299185 CASP8AP2Q9UKL3 1982 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 PFASO15067 1338 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 SPDYE3A6NKU9 549 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 FAM86B1E9PN63 330 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 DDX39AO00148 427 aaKnown RBP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 ADCY6O43306 1168 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 FIBPO43427 364 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 FAM86B2P0C5J1 330 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 PRKCSHP14314 528 aaPredicted RBP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 COPB2P35606 906 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 SREBF1P36956 1147 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 MRPS9P82933 396 aaKnown RBP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 GHRHRQ02643 423 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 DNM1Q05193 864 aaKnown RBP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 SEMA3FQ13275 785 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 GAS6Q14393 721 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 NONOQ15233 471 aaKnown RBP eCLIP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 SAFBQ15424 915 aaKnown RBP eCLIP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 ZNF174Q15697 407 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 LETM2Q2VYF4 491 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 TTC38Q5R3I4 469 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 ARHGEF16Q5VV41 709 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 MYSM1Q5VVJ2 828 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 ARMCX2Q7L311 632 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 OTOP1Q7RTM1 612 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 KRT25Q7Z3Z0 450 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 NOSTRINQ8IVI9 506 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 TRPV1Q8NER1 839 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 USP6NLQ92738 828 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 COPS5Q92905 334 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 MAML3Q96JK9 1138 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 USP28Q96RU2 1077 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 RMDN3Q96TC7 470 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 PDCD2LQ9BRP1 358 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 CFHR5Q9BXR6 569 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 MCOLN1Q9GZU1 580 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 KDM4CQ9H3R0 1056 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 ZNF395Q9H8N7 513 aaPredicted RBP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 BRMS1Q9HCU9 246 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 PDGFCQ9NRA1 345 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 TFIP11Q9UBB9 837 aaKnown RBP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 FBXO40Q9UH90 709 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 ZHX1Q9UKY1 873 aaPredicted RBP7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 CNPY2Q9Y2B0 182 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 KIF3AQ9Y496 699 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 PCDHB6Q9Y5E3 794 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 CLIC4Q9Y696 253 aa7.39□□□□□ -1.23
DEPDC4-201ENST00000299185 PDE4DIPQ5VU43 2346 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 PIK3CDO00329 1044 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 ARIH2O95376 493 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 SNAI1O95863 264 aaPredicted RBP7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 ITGB2P05107 769 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 ARP10275 920 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 XBP1P17861 261 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 ITGB5P18084 799 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 NCLP19338 710 aaKnown RBP7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 GNA11P29992 359 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 MCM7P33993 719 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 RGS2P41220 211 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 MRPL12P52815 198 aaKnown RBP7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 SP4Q02446 784 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 GRIN1Q05586 938 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 AP3B2Q13367 1082 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 TUSC1Q2TAM9 212 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 PDXDC2PQ6P474 469 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 SEPT14Q6ZU15 432 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 DPP9Q86TI2 863 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 MCF2L2Q86YR7 1114 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 SH3TC2Q8TF17 1288 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 PPP1R13LQ8WUF5 828 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 CRYGNQ8WXF5 182 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 TNPO1Q92973 898 aaKnown RBP7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 LENG9Q96B70 501 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 ERO1AQ96HE7 468 aa7.38□□□□□ -1.23
DEPDC4-201ENST00000299185 WDR11Q9BZH6 1224 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms