RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SRBD1Q8N5C6 995 aaKnown RBP16.7■□□□□ 0.26
SHH-201ENST00000297261 KIFC2Q96AC6 838 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 THOC1Q96FV9 657 aaKnown RBP16.7■□□□□ 0.26
SHH-201ENST00000297261 TCHPQ9BT92 498 aa16.7■□□□□ 0.26
SHH-201ENST00000297261 EIF3HO15372 352 aaKnown RBP eCLIP16.69■□□□□ 0.26
SHH-201ENST00000297261 PALMO75781 387 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 HNRNPH1P31943 449 aaKnown RBP16.69■□□□□ 0.26
SHH-201ENST00000297261 FKBP3Q00688 224 aaKnown RBP16.69■□□□□ 0.26
SHH-201ENST00000297261 RBM43Q6ZSC3 357 aaKnown RBP16.69■□□□□ 0.26
SHH-201ENST00000297261 OTUD6AQ7L8S5 288 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 CNKSR2Q8WXI2 1034 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 GJA10Q969M2 543 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 HVCN1Q96D96 273 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 FAM167BQ9BTA0 163 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 KANSL2Q9H9L4 492 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 NOP53Q9NZM5 478 aaKnown RBP16.69■□□□□ 0.26
SHH-201ENST00000297261 HPCAL4Q9UM19 191 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 L1RE1Q9UN81 338 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 PCDHA1Q9Y5I3 950 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 A0A1B0GTH6 734 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 USP17L5A8MUK1 530 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 MYO1FO00160 1098 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 TROVE2P10155 538 aaKnown RBP eCLIP16.69■□□□□ 0.26
SHH-201ENST00000297261 CYP2J2P51589 502 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 LRRC31Q6UY01 552 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 RASGRP2Q7LDG7 609 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 NAP1L4Q99733 375 aaKnown RBP16.69■□□□□ 0.26
SHH-201ENST00000297261 VCX3BQ9H321 246 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 TBK1Q9UHD2 729 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 ANAPC4Q9UJX5 808 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 NT5C2P49902 561 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 CACNB1Q02641 598 aaPredicted RBP16.69■□□□□ 0.26
SHH-201ENST00000297261 CLUL1Q15846 466 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 CPXCR1Q8N123 301 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 SPDL1Q96EA4 605 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 SAAL1Q96ER3 474 aa16.69■□□□□ 0.26
SHH-201ENST00000297261 SASH3O75995 380 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 SEC24CP53992 1094 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 PHLDB3Q6NSJ2 640 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 CCNI2Q6ZMN8 369 aaPredicted RBP16.68■□□□□ 0.26
SHH-201ENST00000297261 SEPT14Q6ZU15 432 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 NEK9Q8TD19 979 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 VIPAS39Q9H9C1 493 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 PACSIN2Q9UNF0 486 aaPredicted RBP16.68■□□□□ 0.26
SHH-201ENST00000297261 TFR2Q9UP52 801 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 MMEP08473 750 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 BCRP11274 1271 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 PLCG1P19174 1290 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 BIRC3Q13489 604 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 MESDQ14696 234 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 NR1I3Q14994 352 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 PARP9Q8IXQ6 854 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 SCYL3Q8IZE3 742 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 ZNF579Q8NAF0 562 aaKnown RBP16.68■□□□□ 0.26
SHH-201ENST00000297261 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.68■□□□□ 0.26
SHH-201ENST00000297261 CFAP61Q8NHU2 1237 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 LARP4BQ92615 738 aaKnown RBP16.68■□□□□ 0.26
SHH-201ENST00000297261 CNOT10Q9H9A5 744 aaKnown RBP16.68■□□□□ 0.26
SHH-201ENST00000297261 OPHN1O60890 802 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 ZBTB7AO95365 584 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 DDR1Q08345 913 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 DPH6Q7L8W6 267 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 SDCCAG8Q86SQ7 713 aaPredicted RBP16.68■□□□□ 0.26
SHH-201ENST00000297261 CCT8L2Q96SF2 557 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 IMPG2Q9BZV3 1241 aa16.68■□□□□ 0.26
SHH-201ENST00000297261 ADD3Q9UEY8 706 aaKnown RBP16.68■□□□□ 0.26
SHH-201ENST00000297261 H0Y3Z8 333 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 RTKN2Q8IZC4 609 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 NEDD1Q8NHV4 660 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 GDAP1Q8TB36 358 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 HNRNPLLQ8WVV9 542 aaKnown RBP16.67■□□□□ 0.26
SHH-201ENST00000297261 RILPQ96NA2 401 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 NR2F2P24468 414 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 GRM4Q14833 912 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 TBCKQ8TEA7 893 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 NT5C3AQ9H0P0 336 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 RASGRF2O14827 1237 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 GFPT1Q06210 699 aaPredicted RBP16.67■□□□□ 0.26
SHH-201ENST00000297261 KIFAP3Q92845 792 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 DISC1Q9NRI5 854 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 SMARCAL1Q9NZC9 954 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 USH1CQ9Y6N9 552 aa16.67■□□□□ 0.26
SHH-201ENST00000297261 POC1B-GALNT4F8VUJ3 575 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 POLRMTO00411 1230 aaKnown RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 AKR1B1P15121 316 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 PRKG1Q13976 671 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 EZH2Q15910 746 aaKnown RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 NBPF9Q3BBW0 867 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 CFAP157Q5JU67 520 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 ATP6V1G3Q96LB4 118 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 DDX47Q9H0S4 455 aaKnown RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 AGTPBP1Q9UPW5 1226 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 ELF1P32519 619 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 GLE1Q53GS7 698 aaKnown RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 ZNF449Q6P9G9 518 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 PHLDB2Q86SQ0 1253 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 KCNV2Q8TDN2 545 aa16.66■□□□□ 0.26
SHH-201ENST00000297261 ZNF277Q9NRM2 450 aaPredicted RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 DNAJC17Q9NVM6 304 aaKnown RBP16.66■□□□□ 0.26
SHH-201ENST00000297261 FAM205CA6NFA0 338 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms