RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 DCCP43146 1447 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 H2AFZP0C0S5 128 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 XRCC5P13010 732 aaKnown RBP16.06■□□□□ 0.16
CCNF-201ENST00000293968 FXR2P51116 673 aaKnown RBP eCLIP16.06■□□□□ 0.16
CCNF-201ENST00000293968 PPP2R2AP63151 447 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 CUL1Q13616 776 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 MSL1Q68DK7 614 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 H2AFVQ71UI9 128 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 PCDHGC5Q9Y5F6 944 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 DCDC2CA8MYV0 355 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 FGGP02679 453 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 GKAP1Q5VSY0 366 aaPredicted RBP16.06■□□□□ 0.16
CCNF-201ENST00000293968 DPP8Q6V1X1 898 aaPredicted RBP16.06■□□□□ 0.16
CCNF-201ENST00000293968 VCPKMTQ9H867 229 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 POTEFA5A3E0 1075 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 CHUKO15111 745 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 POTEIP0CG38 1075 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 PDHBP11177 359 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 SWT1Q5T5J6 900 aaKnown RBP16.06■□□□□ 0.16
CCNF-201ENST00000293968 TTBK2Q6IQ55 1244 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 POTEGQ6S5H5 508 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 POTEEQ6S8J3 1075 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 TPTE2Q6XPS3 522 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 KCTD1Q719H9 257 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 TBC1D31Q96DN5 1066 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 PBKQ96KB5 322 aa16.06■□□□□ 0.16
CCNF-201ENST00000293968 USP17L15C9J2P7 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L13C9JLJ4 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L11C9JVI0 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L18D6R9N7 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L22D6RA61 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L17D6RBQ6 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L19D6RCP7 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L20D6RJB6 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 CTNND1O60716 968 aaKnown RBP16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L24Q0WX57 530 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 IKQ13123 557 aaPredicted RBP16.05■□□□□ 0.16
CCNF-201ENST00000293968 ZNF211Q13398 564 aaPredicted RBP16.05■□□□□ 0.16
CCNF-201ENST00000293968 SNCBQ16143 134 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP17L6PQ6QN14 398 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.05■□□□□ 0.161e-7■■■□□ 18.6
CCNF-201ENST00000293968 PLCB1Q9NQ66 1216 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 FNTAP49354 379 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 CYP4A11Q02928 519 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 PPP4R3AQ6IN85 833 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 LMBR1Q8WVP7 490 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 SEC16BQ96JE7 1060 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 BAIAP2L1Q9UHR4 511 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 NUP98P52948 1817 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 HGSO14964 777 aaPredicted RBP16.05■□□□□ 0.16
CCNF-201ENST00000293968 ECM2O94769 699 aaPredicted RBP16.05■□□□□ 0.16
CCNF-201ENST00000293968 UCHL3P15374 230 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 USP11P51784 963 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 ZNF804AQ7Z570 1209 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 RAPGEF5Q92565 580 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 PSTPIP2Q9H939 334 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 IFNAR2P48551 515 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 MTMR3Q13615 1198 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 TRIM59Q8IWR1 403 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 NEDD1Q8NHV4 660 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 SCFD1Q8WVM8 642 aa16.05■□□□□ 0.16
CCNF-201ENST00000293968 ABCB11O95342 1321 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 AFPP02771 609 aaKnown RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 VIMP08670 466 aaKnown RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 SLCO1A2P46721 670 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 PLTPP55058 493 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 LLGL1Q15334 1064 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 PPP1R7Q15435 360 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 UAP1Q16222 522 aaPredicted RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 PNMA8AQ86V59 439 aaPredicted RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 MREGQ8N565 214 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 CUL5Q93034 780 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 DNAJC19Q96DA6 116 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 CEP63Q96MT8 703 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 SPDYE3A6NKU9 549 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 SFI1A8K8P3 1242 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 RPSAP08865 295 aaKnown RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 MRPL12P52815 198 aaKnown RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 NT5C3AQ9H0P0 336 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 CNOT8Q9UFF9 292 aaKnown RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 NAGPAQ9UK23 515 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 AMFRQ9UKV5 643 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 PNMA2Q9UL42 364 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 RBAK-RBAKDNI3L0D1 243 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 PDIA5Q14554 519 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 SAMD1Q6SPF0 538 aaPredicted RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 CCDC25Q86WR0 208 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 CD302Q8IX05 232 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 SYN2Q92777 582 aaPredicted RBP16.04■□□□□ 0.16
CCNF-201ENST00000293968 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.04■□□□□ 0.161e-6■■■■■ 114.5
CCNF-201ENST00000293968 GCNT4Q9P109 453 aa16.04■□□□□ 0.16
CCNF-201ENST00000293968 GCNT3O95395 438 aa16.03■□□□□ 0.16
CCNF-201ENST00000293968 PAXIP1Q6ZW49 1069 aaPredicted RBP16.03■□□□□ 0.16
CCNF-201ENST00000293968 N4BP2L2Q92802 583 aaPredicted RBP16.03■□□□□ 0.16
CCNF-201ENST00000293968 ZKSCAN4Q969J2 545 aaPredicted RBP16.03■□□□□ 0.16
CCNF-201ENST00000293968 NYXQ9GZU5 481 aa16.03■□□□□ 0.16
CCNF-201ENST00000293968 ODF2LQ9ULJ1 636 aa16.03■□□□□ 0.16
CCNF-201ENST00000293968 TOGARAM1Q9Y4F4 1720 aa16.03■□□□□ 0.16
CCNF-201ENST00000293968 ZNF335Q9H4Z2 1342 aaPredicted RBP16.03■□□□□ 0.16
CCNF-201ENST00000293968 GNPATO15228 680 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms