RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 RABEP1Q15276 862 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 TRIM71Q2Q1W2 868 aaKnown RBP10.45□□□□□ -0.74
HMGN1-201ENST00000288344 RASIP1Q5U651 963 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 GDF6Q6KF10 455 aaPredicted RBP10.45□□□□□ -0.74
HMGN1-201ENST00000288344 NLRX1Q86UT6 975 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 TRIM22Q8IYM9 498 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 BLIDQ8IZY5 108 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 ZNF687Q8N1G0 1237 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 TET1Q8NFU7 2136 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 PPP1R13LQ8WUF5 828 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 DHX38Q92620 1227 aaKnown RBP10.45□□□□□ -0.74
HMGN1-201ENST00000288344 BADQ92934 168 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 CDHR1Q96JP9 859 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 LLPHQ9BRT6 129 aaKnown RBP10.45□□□□□ -0.74
HMGN1-201ENST00000288344 NOC4LQ9BVI4 516 aaKnown RBP10.45□□□□□ -0.74
HMGN1-201ENST00000288344 TMUB1Q9BVT8 246 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 TRMT13Q9NUP7 481 aaKnown RBP10.45□□□□□ -0.74
HMGN1-201ENST00000288344 ORC3Q9UBD5 711 aaPredicted RBP10.45□□□□□ -0.74
HMGN1-201ENST00000288344 KCNJ14Q9UNX9 436 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 EYSQ5T1H1 3165 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 WDR81Q562E7 1941 aa10.45□□□□□ -0.74
HMGN1-201ENST00000288344 UMODL1Q5DID0 1318 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 DCDC2CA8MYV0 355 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 CPLX1O14810 134 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 CDKL5O76039 1030 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 LGALS2P05162 132 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 PSEN2P49810 448 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 NLRP5P59047 1200 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 AKAP17AQ02040 695 aaKnown RBP10.44□□□□□ -0.74
HMGN1-201ENST00000288344 Q4G0T1 1027 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 MFSD5Q6N075 450 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 CPLX2Q6PUV4 134 aaKnown RBP10.44□□□□□ -0.74
HMGN1-201ENST00000288344 ABHD15Q6UXT9 468 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 GIMAP8Q8ND71 665 aaPredicted RBP10.44□□□□□ -0.74
HMGN1-201ENST00000288344 CCDC148Q8NFR7 591 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 BICD2Q8TD16 824 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 WNT8BQ93098 351 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 WNT8AQ9H1J5 351 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 RNPEPQ9H4A4 650 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 MLXIPQ9HAP2 919 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 TMEM39AQ9NV64 488 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 HDAC6Q9UBN7 1215 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 DAXXQ9UER7 740 aaPredicted RBP10.44□□□□□ -0.74
HMGN1-201ENST00000288344 GTF2IRD1Q9UHL9 959 aa10.44□□□□□ -0.74
HMGN1-201ENST00000288344 H3BRB1 525 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 SORBS3O60504 671 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 ATP4AP20648 1035 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 FXR1P51114 621 aaKnown RBP eCLIP10.43□□□□□ -0.74
HMGN1-201ENST00000288344 ZNF200P98182 395 aaPredicted RBP10.43□□□□□ -0.74
HMGN1-201ENST00000288344 MDM2Q00987 491 aaPredicted RBP10.43□□□□□ -0.74
HMGN1-201ENST00000288344 KIAA0753Q2KHM9 967 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 BRDTQ58F21 947 aaPredicted RBP10.43□□□□□ -0.74
HMGN1-201ENST00000288344 MOXD1Q6UVY6 613 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 TBCKQ8TEA7 893 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 SEPT1Q8WYJ6 367 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 SLC5A5Q92911 643 aa10.43□□□□□ -0.74
HMGN1-201ENST00000288344 ZSCAN31Q96LW9 406 aaPredicted RBP10.43□□□□□ -0.74
HMGN1-201ENST00000288344 TUT1Q9H6E5 874 aaKnown RBP10.43□□□□□ -0.74
HMGN1-201ENST00000288344 RBAK-RBAKDNI3L0D1 243 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 WNT7AO00755 349 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 MSH4O15457 936 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 PSMD10O75832 226 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 STBD1O95210 358 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 ZNF286BP0CG31 522 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 LRIT3Q3SXY7 679 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 C9orf50Q5SZB4 431 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 MARCH8Q5T0T0 291 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 C6orf132Q5T0Z8 1188 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 PPP4R3AQ6IN85 833 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 PLA2G4DQ86XP0 818 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 TRIM50Q86XT4 487 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 ETNPPLQ8TBG4 499 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 VTI1AQ96AJ9 217 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 TMX3Q96JJ7 454 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 ALG1Q9BT22 464 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 KCNMB3Q9NPA1 279 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 SH2B1Q9NRF2 756 aaPredicted RBP10.42□□□□□ -0.74
HMGN1-201ENST00000288344 EMSYQ7Z589 1322 aa10.42□□□□□ -0.74
HMGN1-201ENST00000288344 PRUNE2Q8WUY3 3088 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 MBLAC1A4D2B0 266 aaPredicted RBP10.41□□□□□ -0.74
HMGN1-201ENST00000288344 ZBTB42B2RXF5 422 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 BTBD18B2RXH4 712 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 IPO5O00410 1097 aaKnown RBP10.41□□□□□ -0.74
HMGN1-201ENST00000288344 SOX1O00570 391 aaPredicted RBP10.41□□□□□ -0.74
HMGN1-201ENST00000288344 MMP1P03956 469 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 SUPT20HL2P0C7V6 817 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 CYP2C9P11712 490 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 CYP2C18P33260 490 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 TCF7P36402 384 aaPredicted RBP10.41□□□□□ -0.74
HMGN1-201ENST00000288344 ACTR2P61160 394 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 NR5A1Q13285 461 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 CUL4AQ13619 759 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 SHHQ15465 462 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 TMEM240Q5SV17 173 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 KRT40Q6A162 431 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 PLPPR4Q7Z2D5 763 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 RPAINQ86UA6 219 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 SERINC5Q86VE9 423 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 CCDC83Q8IWF9 413 aa10.41□□□□□ -0.74
HMGN1-201ENST00000288344 FBXO18Q8NFZ0 1043 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms