RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SSU72P8A0A1W2PR75 194 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RASSF9O75901 435 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ATP6V1G2O95670 118 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PPP2R5CQ13362 524 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PDZD4Q76G19 769 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PIK3R5Q8WYR1 880 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ATP8A1Q9Y2Q0 1164 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 AATKQ6ZMQ8 1374 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 H0Y626 953 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 GOLGA8TH3BQL2 631 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 TRIM16O95361 564 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 ANP32DO95626 131 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 GOLGA8HP0CJ92 632 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 NEK10Q6ZWH5 1172 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PALM2Q8IXS6 379 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RIN3Q8TB24 985 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 WDR60Q8WVS4 1066 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 SYN2Q92777 582 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RANBP17Q9H2T7 1088 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 SERTAD1Q9UHV2 236 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 RABGEF1Q9UJ41 708 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 XPOTO43592 962 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MSH2P43246 934 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 CCDC153Q494R4 210 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PATL1Q86TB9 770 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 FMR1NBQ8N0W7 255 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 LRRC43Q8N309 656 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 P2RX5Q93086 422 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 APOBEC2Q9Y235 224 aaKnown RBP5.03□□□□□ -1.6
SCN1A-220ENST00000641603 MAP3K2Q9Y2U5 619 aa5.03□□□□□ -1.6
SCN1A-220ENST00000641603 PI4KAP2A4QPH2 592 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PPARGP37231 505 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SCTRP47872 440 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PMS2P54278 862 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 DIXDC1Q155Q3 683 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 HADHQ16836 314 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MCM10Q7L590 875 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PACS2Q86VP3 889 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PI4KAP1Q8N8J0 262 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SPATA4Q8NEY3 305 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TRIM31Q9BZY9 425 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 RAB20Q9NX57 234 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 AGTPBP1Q9UPW5 1226 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PCDHA13Q9Y5I0 950 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 HOXB6P17509 224 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 GAP43P17677 238 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 IFNAR2P48551 515 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 NAPAP54920 295 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MAGOHP61326 146 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 IGBP1P78318 339 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TRIM16LQ309B1 348 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 KBTBD12Q3ZCT8 623 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 UNC13DQ70J99 1090 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MAGOHBQ96A72 148 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CNOT6LQ96LI5 555 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CEP19Q96LK0 163 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MRC2Q9UBG0 1479 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CHMP2AO43633 222 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 HMOX2P30519 316 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 NLRP11P59045 1033 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 VSNL1P62760 191 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ZCWPW2Q504Y3 356 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PDIK1LQ8N165 341 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PIGOQ8TEQ8 1089 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PKD2L2Q9NZM6 624 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 A0A1B0GTH6 734 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SAC3D1A6NKF1 404 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PDHA1P08559 390 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 IMPDH2P12268 514 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MRPS15P82914 257 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ATP2B2Q01814 1243 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 C1orf146Q5VVC0 180 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CADPS2Q86UW7 1296 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CCDC127Q96BQ5 260 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 NLRP2Q9NX02 1062 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ABCF2Q9UG63 623 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PCDHB13Q9Y5F0 798 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CDH2P19022 906 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PSMC1P62191 440 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TMEM132EQ6IEE7 984 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CNBD1Q8NA66 436 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 GORASP1Q9BQQ3 440 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SAR1AQ9NR31 198 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SH3GLB1Q9Y371 365 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ABCC1P33527 1531 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 KPNA7A9QM74 516 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SNRPA1P09661 255 aaKnown RBP5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PKP1Q13835 747 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CNGA3Q16281 694 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TTC13Q8NBP0 860 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 IL17RAQ96F46 866 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 DYDC2Q96IM9 177 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 ANKFY1Q9P2R3 1169 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 LRWD1Q9UFC0 647 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 TMED5Q9Y3A6 229 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 SOWAHDA6NJG2 315 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 MINDY4BA8MYZ0 360 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 CA4P22748 312 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 NOS1P29475 1434 aa5.02□□□□□ -1.61
SCN1A-220ENST00000641603 PGM1P36871 562 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms