RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SGMS1Q86VZ5 419 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 TTLL11Q8NHH1 800 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 SPATA3Q8NHX4 192 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 CFHR4Q92496 578 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 ANKS1AQ92625 1134 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 HAS1Q92839 578 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 LENG9Q96B70 501 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 TRMT2BQ96GJ1 504 aaKnown RBP1.26□□□□□ -2.21
VPS35-212ENST00000640313 SCYL1Q96KG9 808 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 KRTAP4-4Q9BYR3 166 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 KLHL25Q9H0H3 589 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 TOR3AQ9H497 397 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 KBTBD4Q9NVX7 518 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 CLEC1BQ9P126 229 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 ASH2LQ9UBL3 628 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 CGGBP1Q9UFW8 167 aaPredicted RBP1.26□□□□□ -2.21
VPS35-212ENST00000640313 PARP2Q9UGN5 583 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 NR2E1Q9Y466 385 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 PCDHB4Q9Y5E5 795 aa1.26□□□□□ -2.21
VPS35-212ENST00000640313 COL3A1P02461 1466 aaPredicted RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 GRID2IPA4D2P6 1211 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 H7BY64 318 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 TRAF5O00463 557 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 ARHGAP6O43182 974 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 PPM1BO75688 479 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 ENO2P09104 434 aaPredicted RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 HOXB6P17509 224 aaKnown RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 FPR2P25090 351 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 CLK3P49761 638 aaKnown RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 APOBRQ0VD83 1088 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 TOP3AQ13472 1001 aaPredicted RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 NOLC1Q14978 699 aaKnown RBP eCLIP1.25□□□□□ -2.21
VPS35-212ENST00000640313 ZYXQ15942 572 aaKnown RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 SKIDA1Q1XH10 827 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 PHF19Q5T6S3 580 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 STEAP3Q658P3 488 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 CYP4F22Q6NT55 531 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 ERICH6Q7L0X2 663 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 HDGFL2Q7Z4V5 671 aaPredicted RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 NLRP10Q86W26 655 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 VRK3Q8IV63 474 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 TRIM48Q8IWZ4 208 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 STPG3Q8N7X2 389 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 Q8N9P0 234 aaPredicted RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 ADCY4Q8NFM4 1077 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 PHOSPHO1Q8TCT1 267 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 MICAL1Q8TDZ2 1067 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 SCARB1Q8WTV0 552 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 PPIL4Q8WUA2 492 aaKnown RBP eCLIP1.25□□□□□ -2.21
VPS35-212ENST00000640313 WASF1Q92558 559 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 NKD1Q969G9 470 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 TMEM169Q96HH4 297 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 MPHOSPH9Q99550 1183 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 HAUS7Q99871 368 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 NT5C1AQ9BXI3 368 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 GBP3Q9H0R5 595 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 C12orf65Q9H3J6 166 aaKnown RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 SMOC1Q9H4F8 434 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 NRDE2Q9H7Z3 1164 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 GPRC5CQ9NQ84 441 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 BTG4Q9NY30 223 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 UBP1Q9NZI7 540 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 RBPJLQ9UBG7 517 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 PUF60Q9UHX1 559 aaKnown RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 ZFP69BQ9UJL9 534 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 ZNRF3Q9ULT6 936 aa1.25□□□□□ -2.21
VPS35-212ENST00000640313 COA3Q9Y2R0 106 aaPredicted RBP1.25□□□□□ -2.21
VPS35-212ENST00000640313 CAPN14A8MX76 684 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 KIAA0355O15063 1070 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 MAFKO60675 156 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 RPS6KA4O75676 772 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 IL18BPO95998 194 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 PRKCSHP14314 528 aaPredicted RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 GUCY2CP25092 1073 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 BCL6P41182 706 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 ETV4P43268 484 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 TAP1Q03518 808 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 TOB2Q14106 344 aaPredicted RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 TESK1Q15569 626 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 EAPPQ56P03 285 aaPredicted RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 E4F1Q66K89 784 aaPredicted RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 HEATR6Q6AI08 1181 aaKnown RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 ZNF662Q6ZS27 426 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 RD3Q7Z3Z2 195 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 ADAT2Q7Z6V5 191 aaKnown RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 GPR135Q8IZ08 494 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 ANKRD35Q8N283 1001 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 D2HGDHQ8N465 521 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 ZNF513Q8N8E2 541 aaPredicted RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 RBBP8NLQ8NC74 664 aaPredicted RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 NPLOC4Q8TAT6 608 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 THAP3Q8WTV1 239 aaPredicted RBP1.24□□□□□ -2.21
VPS35-212ENST00000640313 FRS2Q8WU20 508 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 COPRSQ9NQ92 184 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 CYP26B1Q9NR63 512 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 FAM86C1Q9NVL1 165 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 ARHGAP20Q9P2F6 1191 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 MYOTQ9UBF9 498 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 ADAMTS1Q9UHI8 967 aa1.24□□□□□ -2.21
VPS35-212ENST00000640313 XDHP47989 1333 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms