RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 VWCEQ96DN2 955 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 FAM217BQ9NTX9 383 aaPredicted RBP13.31□□□□□ -0.28
CLN3-257ENST00000637110 PKD2L1Q9P0L9 805 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 FRMPD4Q14CM0 1322 aa13.31□□□□□ -0.28
CLN3-257ENST00000637110 ZNF318Q5VUA4 2279 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.3□□□□□ -0.28
CLN3-257ENST00000637110 hCG_1984214I3L0E3 225 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 STXBP3O00186 592 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 ST18O60284 1047 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 LPXNO60711 386 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 BAIAP3O94812 1187 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 KCNA5P22460 613 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 ICAM3P32942 547 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 KCNJ6P48051 423 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 FOXK2Q01167 660 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 BFSP2Q13515 415 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 UTP14CQ5TAP6 766 aaKnown RBP13.3□□□□□ -0.28
CLN3-257ENST00000637110 PTCRAQ6ISU1 281 aaPredicted RBP13.3□□□□□ -0.28
CLN3-257ENST00000637110 PPP1R18Q6NYC8 613 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 CCDC155Q8N6L0 562 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 ZNF713Q8N859 430 aaPredicted RBP13.3□□□□□ -0.28
CLN3-257ENST00000637110 GDPD5Q8WTR4 605 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 KAT2BQ92831 832 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 PGBD1Q96JS3 809 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 MFSD14AQ96MC6 490 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 INPP4AQ96PE3 977 aaPredicted RBP13.3□□□□□ -0.28
CLN3-257ENST00000637110 UPF3BQ9BZI7 483 aaKnown RBP13.3□□□□□ -0.28
CLN3-257ENST00000637110 FTOQ9C0B1 505 aaKnown RBP eCLIP13.3□□□□□ -0.28
CLN3-257ENST00000637110 RIC8AQ9NPQ8 531 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 HDAC6Q9UBN7 1215 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 FAM50BQ9Y247 325 aa13.3□□□□□ -0.28
CLN3-257ENST00000637110 TANC1Q9C0D5 1861 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 PPFIA3O75145 1194 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 FOSP01100 380 aaPredicted RBP13.29□□□□□ -0.28
CLN3-257ENST00000637110 SCG2P13521 617 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 ZNF76P36508 570 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 FUT2Q10981 343 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 PFKFB3Q16875 520 aaPredicted RBP13.29□□□□□ -0.28
CLN3-257ENST00000637110 GDF6Q6KF10 455 aaPredicted RBP13.29□□□□□ -0.28
CLN3-257ENST00000637110 GIMAP8Q8ND71 665 aaPredicted RBP13.29□□□□□ -0.28
CLN3-257ENST00000637110 CCDC12Q8WUD4 166 aaPredicted RBP13.29□□□□□ -0.28
CLN3-257ENST00000637110 PHKBQ93100 1093 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 CDHR1Q96JP9 859 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 LARP6Q9BRS8 491 aaKnown RBP13.29□□□□□ -0.28
CLN3-257ENST00000637110 SLC26A6Q9BXS9 759 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 GLT8D2Q9H1C3 349 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 BCAS3Q9H6U6 928 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 ZSWIM6Q9HCJ5 1215 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 PDRG1Q9NUG6 133 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 TMEM260Q9NX78 707 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 BARHL2Q9NY43 387 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 SCN10AQ9Y5Y9 1956 aa13.29□□□□□ -0.28
CLN3-257ENST00000637110 PITPNM1O00562 1244 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 CPLX1O14810 134 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 ARHGEF15O94989 841 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 F2P00734 622 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 IL9P15248 144 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 PDIA3P30101 505 aaKnown RBP13.28□□□□□ -0.28
CLN3-257ENST00000637110 STK3Q13188 491 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 SEMA3FQ13275 785 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 MTMR1Q13613 665 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 JAKMIP3Q5VZ66 844 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 TYW1BQ6NUM6 668 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 METTL7BQ6UX53 244 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.28□□□□□ -0.28
CLN3-257ENST00000637110 GPRASP2Q96D09 838 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 ZBED2Q9BTP6 218 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 NCOA5Q9HCD5 579 aaKnown RBP13.28□□□□□ -0.28
CLN3-257ENST00000637110 C6orf50Q9HD87 102 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 GTF2IRD1Q9UHL9 959 aa13.28□□□□□ -0.28
CLN3-257ENST00000637110 POTEB3A0JP26 581 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 GRXCR2A6NFK2 248 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 H3BRB1 525 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 PRPF3O43395 683 aaKnown RBP13.27□□□□□ -0.29
CLN3-257ENST00000637110 EIF5BO60841 1220 aaKnown RBP13.27□□□□□ -0.29
CLN3-257ENST00000637110 LGALS2P05162 132 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 ITGB5P18084 799 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 CPLX2Q6PUV4 134 aaKnown RBP13.27□□□□□ -0.29
CLN3-257ENST00000637110 POTEBQ6S5H4 581 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 SESTD1Q86VW0 696 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 TRIM22Q8IYM9 498 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 FBXL16Q8N461 479 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 GPR20Q99678 358 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 SENP7Q9BQF6 1050 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 ANO3Q9BYT9 981 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 TM6SF1Q9BZW5 370 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 TUT1Q9H6E5 874 aaKnown RBP13.27□□□□□ -0.29
CLN3-257ENST00000637110 JADE2Q9NQC1 790 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 ZNF215Q9UL58 517 aaPredicted RBP13.27□□□□□ -0.29
CLN3-257ENST00000637110 UBIAD1Q9Y5Z9 338 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 SIP14410 1827 aa13.27□□□□□ -0.29
CLN3-257ENST00000637110 C17orf102A2RUQ5 167 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 HAS3O00219 553 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 ATP9AO75110 1047 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 IQCF3P0C7M6 154 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 GNA11P29992 359 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 ZNF200P98182 395 aaPredicted RBP13.26□□□□□ -0.29
CLN3-257ENST00000637110 SSRP1Q08945 709 aaKnown RBP13.26□□□□□ -0.29
CLN3-257ENST00000637110 AP3B2Q13367 1082 aa13.26□□□□□ -0.29
CLN3-257ENST00000637110 TOB2Q14106 344 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms