RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ORC4O43929 436 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 CHRNA1P02708 482 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 GOLGA8HP0CJ92 632 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 SP2Q02086 613 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 RRP12Q5JTH9 1297 aaKnown RBP17.01■□□□□ 0.31
CLN3-249ENST00000636685 KREMEN2Q8NCW0 462 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 TLE6Q9H808 572 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 TOMM22Q9NS69 142 aa17.01■□□□□ 0.31
CLN3-249ENST00000636685 SUPT16HQ9Y5B9 1047 aaKnown RBP17.01■□□□□ 0.31
CLN3-249ENST00000636685 KMT2BQ9UMN6 2715 aaPredicted RBP17■□□□□ 0.31
CLN3-249ENST00000636685 LGALS2P05162 132 aa17■□□□□ 0.31
CLN3-249ENST00000636685 SNHG28P0DPA3 235 aa17■□□□□ 0.31
CLN3-249ENST00000636685 MYCLP12524 364 aaPredicted RBP17■□□□□ 0.31
CLN3-249ENST00000636685 CDC37Q16543 378 aaPredicted RBP17■□□□□ 0.31
CLN3-249ENST00000636685 NAALADL2Q58DX5 795 aa17■□□□□ 0.31
CLN3-249ENST00000636685 RMDN1Q96DB5 314 aa17■□□□□ 0.31
CLN3-249ENST00000636685 BCAS3Q9H6U6 928 aa17■□□□□ 0.31
CLN3-249ENST00000636685 ZBTB40Q9NUA8 1239 aa17■□□□□ 0.31
CLN3-249ENST00000636685 ANAPC4Q9UJX5 808 aa17■□□□□ 0.31
CLN3-249ENST00000636685 UBA1P22314 1058 aaKnown RBP16.99■□□□□ 0.31
CLN3-249ENST00000636685 LPIN1Q14693 890 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 PAN2Q504Q3 1202 aaKnown RBP16.99■□□□□ 0.31
CLN3-249ENST00000636685 ZMYM1Q5SVZ6 1142 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 MCTP2Q6DN12 878 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 MCF2L2Q86YR7 1114 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 ATP8B4Q8TF62 1192 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 GPKOWQ92917 476 aaPredicted RBP eCLIP16.99■□□□□ 0.31
CLN3-249ENST00000636685 MAF1Q9H063 256 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 SMOC2Q9H3U7 446 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 EHMT1Q9H9B1 1298 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 TCP11L1Q9NUJ3 509 aa16.99■□□□□ 0.31
CLN3-249ENST00000636685 PPFIA3O75145 1194 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 BRD1O95696 1058 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 FGRP09769 529 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 HSPD1P10809 573 aaKnown RBP16.98■□□□□ 0.31
CLN3-249ENST00000636685 ASTLQ6HA08 431 aaPredicted RBP16.98■□□□□ 0.31
CLN3-249ENST00000636685 DGLUCYQ7Z3D6 616 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 CMTR2Q8IYT2 770 aaKnown RBP16.98■□□□□ 0.31
CLN3-249ENST00000636685 ZFP91Q96JP5 570 aaPredicted RBP16.98■□□□□ 0.31
CLN3-249ENST00000636685 NEK1Q96PY6 1258 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 APOL5Q9BWW9 433 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 S1PR5Q9H228 398 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 MLXIPQ9HAP2 919 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 CEP250Q9BV73 2442 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 LOXHD1Q8IVV2 1947 aa16.98■□□□□ 0.31
CLN3-249ENST00000636685 CFBP00751 764 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 GNAT1P11488 350 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 ARHGAP4P98171 946 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 VPS53Q5VIR6 699 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 KCNV1Q6PIU1 500 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 MICAL1Q8TDZ2 1067 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 LINC01599Q8WXQ3 324 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 GPATCH3Q96I76 525 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 PDCD2LQ9BRP1 358 aa16.97■□□□□ 0.31
CLN3-249ENST00000636685 CCDC171Q6TFL3 1326 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 GATMP50440 423 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 ADAM17P78536 824 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 MGAT3Q09327 533 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 MTMR3Q13615 1198 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 DUSP6Q16828 381 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 QRICH1Q2TAL8 776 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 GPATCH4Q5T3I0 446 aaKnown RBP16.96■□□□□ 0.31
CLN3-249ENST00000636685 RUFY4Q6ZNE9 571 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 TRIM50Q86XT4 487 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 UBALD2Q8IYN6 164 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 IL31RAQ8NI17 732 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 LMBR1Q8WVP7 490 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 TSHZ2Q9NRE2 1034 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 SORCS3Q9UPU3 1222 aa16.96■□□□□ 0.31
CLN3-249ENST00000636685 MRPL11Q9Y3B7 192 aaKnown RBP16.96■□□□□ 0.31
CLN3-249ENST00000636685 ACACBO00763 2458 aa16.95■□□□□ 0.3
CLN3-249ENST00000636685 SYCE2Q6PIF2 218 aa16.95■□□□□ 0.3
CLN3-249ENST00000636685 RTN4RL1Q86UN2 441 aaPredicted RBP16.95■□□□□ 0.3
CLN3-249ENST00000636685 ADGRF4Q8IZF3 695 aa16.95■□□□□ 0.3
CLN3-249ENST00000636685 CRIPAKQ8N1N5 446 aa16.95■□□□□ 0.3
CLN3-249ENST00000636685 CNTNAP3BQ96NU0 1288 aa16.95■□□□□ 0.3
CLN3-249ENST00000636685 CNTNAP3Q9BZ76 1288 aa16.95■□□□□ 0.3
CLN3-249ENST00000636685 CDH22Q9UJ99 828 aa16.95■□□□□ 0.3
CLN3-249ENST00000636685 SPTBN2O15020 2390 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 NOP56O00567 594 aaKnown RBP16.94■□□□□ 0.3
CLN3-249ENST00000636685 OPLAHO14841 1288 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 ARP10275 920 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 TECP42680 631 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 FBXO47Q5MNV8 452 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 ANKRD54Q6NXT1 300 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 VSIG10LQ86VR7 867 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 USP26Q9BXU7 913 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 MFSD1Q9H3U5 465 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 DDX19BQ9UMR2 479 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 TELO2Q9Y4R8 837 aa16.94■□□□□ 0.3
CLN3-249ENST00000636685 FNDC1Q4ZHG4 1894 aaPredicted RBP16.93■□□□□ 0.3
CLN3-249ENST00000636685 TGFB3P10600 412 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 HSD17B4P51659 736 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 ERVFC1P60507 584 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 PGM5Q15124 567 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 UTP14CQ5TAP6 766 aaKnown RBP16.93■□□□□ 0.3
CLN3-249ENST00000636685 NPAS4Q8IUM7 802 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 TTC14Q96N46 770 aa16.93■□□□□ 0.3
CLN3-249ENST00000636685 CDCA3Q99618 268 aaPredicted RBP16.93■□□□□ 0.3
CLN3-249ENST00000636685 AGO3Q9H9G7 860 aaKnown RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms