RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DHTKD1Q96HY7 919 aaPredicted RBP11.8□□□□□ -0.52
CLN3-248ENST00000636355 RBPJLQ9UBG7 517 aa11.8□□□□□ -0.52
CLN3-248ENST00000636355 KIAA1024Q9UPX6 916 aa11.8□□□□□ -0.52
CLN3-248ENST00000636355 DNAJC25-GNG10A0A024R161 153 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 MANSC4A6NHS7 340 aaPredicted RBP11.79□□□□□ -0.52
CLN3-248ENST00000636355 MYMKA6NI61 221 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 PPP1R3GB7ZBB8 358 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 PDHXO00330 501 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 CBFA2T2O43439 604 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 EIF3JO75822 258 aaKnown RBP11.79□□□□□ -0.52
CLN3-248ENST00000636355 P4HBP07237 508 aaKnown RBP11.79□□□□□ -0.52
CLN3-248ENST00000636355 ARP10275 920 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 ZNF18P17022 549 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 ERCC3P19447 782 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 SPAG1Q07617 926 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 KCTD2Q14681 263 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 FAM110CQ1W6H9 321 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 KMT5BQ4FZB7 885 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 SPATA1Q5VX52 437 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 KCNV1Q6PIU1 500 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 MIER3Q7Z3K6 550 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 KCNK18Q7Z418 384 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 NCAPG2Q86XI2 1143 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 CCDC65Q8IXS2 484 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 ADSSL1Q8N142 457 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 SYT2Q8N9I0 419 aaPredicted RBP11.79□□□□□ -0.52
CLN3-248ENST00000636355 NOC3LQ8WTT2 800 aaKnown RBP11.79□□□□□ -0.52
CLN3-248ENST00000636355 BRI3BPQ8WY22 251 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 DDX12PQ92771 950 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 TRIM44Q96DX7 344 aaPredicted RBP11.79□□□□□ -0.52
CLN3-248ENST00000636355 HHIPL1Q96JK4 782 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 NACC1Q96RE7 527 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 NUDT12Q9BQG2 462 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 PAGR1Q9BTK6 254 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 TIPINQ9BVW5 301 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 BLZF1Q9H2G9 400 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 UNC45AQ9H3U1 944 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 PCDH10Q9P2E7 1040 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 SEL1LQ9UBV2 794 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 PASKQ96RG2 1323 aa11.79□□□□□ -0.52
CLN3-248ENST00000636355 DOCK5Q9H7D0 1870 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 MCM3APO60318 1980 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 BTBD19C9JJ37 291 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 EML1O00423 815 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 STRNO43815 780 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 TGFB3P10600 412 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 FCER1AP12319 257 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 MYCLP12524 364 aaPredicted RBP11.78□□□□□ -0.52
CLN3-248ENST00000636355 GAP43P17677 238 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 CYP11B2P19099 503 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 ZNF75DP51815 510 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 HUNKP57058 714 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 INHBEP58166 350 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 PDE4DQ08499 809 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 ITGB3BPQ13352 177 aaPredicted RBP11.78□□□□□ -0.52
CLN3-248ENST00000636355 IRF5Q13568 498 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 ZNF467Q7Z7K2 595 aaPredicted RBP11.78□□□□□ -0.52
CLN3-248ENST00000636355 GPBP1Q86WP2 473 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 GUF1Q8N442 669 aaKnown RBP11.78□□□□□ -0.52
CLN3-248ENST00000636355 GPRC5AQ8NFJ5 357 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 MORC4Q8TE76 937 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 GJA10Q969M2 543 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 DNAJC19Q96DA6 116 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 CTAGE1Q96RT6 745 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 LXNQ9BS40 222 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 TRIM5Q9C035 493 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 ZSWIM4Q9H7M6 989 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 DBR1Q9UK59 544 aaKnown RBP11.78□□□□□ -0.52
CLN3-248ENST00000636355 ODF2LQ9ULJ1 636 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 NFE2L3Q9Y4A8 694 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 UBE4BO95155 1302 aa11.78□□□□□ -0.52
CLN3-248ENST00000636355 A0A087WWV3 80 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.77□□□□□ -0.53
CLN3-248ENST00000636355 SPATA31C2B4DYI2 1134 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 KCNA2P16389 499 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 GUCY2CP25092 1073 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 CASP1P29466 404 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 LRRC63Q05C16 580 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 FMR1Q06787 632 aaKnown RBP eCLIP11.77□□□□□ -0.53
CLN3-248ENST00000636355 ECM1Q16610 540 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 FAM26FQ5R3K3 315 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 CDKAL1Q5VV42 579 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 CST9Q5W186 159 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 RASAL3Q86YV0 1011 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 C4orf19Q8IY42 314 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 ANKRD20A12PQ8NF67 263 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 STAMQ92783 540 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 ATP6V0A1Q93050 837 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 PLIN2Q99541 437 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 MMP19Q99542 508 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 HSD3B7Q9H2F3 369 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 JPH1Q9HDC5 661 aaPredicted RBP11.77□□□□□ -0.53
CLN3-248ENST00000636355 TXNRD2Q9NNW7 524 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 OLFML3Q9NRN5 406 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 ASTN1O14525 1302 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 ADGRA2Q96PE1 1338 aa11.77□□□□□ -0.53
CLN3-248ENST00000636355 ASB14A6NK59 587 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 E9PMD0 336 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 CHMP2AO43633 222 aa11.76□□□□□ -0.53
CLN3-248ENST00000636355 TBCAO75347 108 aaKnown RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms