RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PPP2R2AP63151 447 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 KLF10Q13118 480 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 TUSC3Q13454 348 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 PRKD1Q15139 912 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-208ENST00000625916 ZNF568Q3ZCX4 644 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 PAN2Q504Q3 1202 aaKnown RBP4.93□□□□□ -1.62
SCN1A-208ENST00000625916 CRB2Q5IJ48 1285 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 MICAL1Q8TDZ2 1067 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 AJUBAQ96IF1 538 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 CDIP1Q9H305 208 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 ARHGAP20Q9P2F6 1191 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 PPARGC1AQ9UBK2 798 aaKnown RBP4.93□□□□□ -1.62
SCN1A-208ENST00000625916 PRKAG3Q9UGI9 489 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 ING1Q9UK53 422 aaPredicted RBP4.93□□□□□ -1.62
SCN1A-208ENST00000625916 SLC4A7Q9Y6M7 1214 aa4.93□□□□□ -1.62
SCN1A-208ENST00000625916 FOXS1O43638 330 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 MSCO60682 206 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 KNG1P01042 644 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 ENO2P09104 434 aaPredicted RBP4.92□□□□□ -1.62
SCN1A-208ENST00000625916 FAHP16930 419 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 CSF2RBP32927 897 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 SPIRE1Q08AE8 756 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 TCTN3Q6NUS6 607 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 OTOP3Q7RTS5 596 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 STPG3Q8N7X2 389 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 ADOQ96SZ5 270 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 KCNJ15Q99712 375 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 IER2Q9BTL4 223 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 PHF20Q9BVI0 1012 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 EPN3Q9H201 632 aa4.92□□□□□ -1.62
SCN1A-208ENST00000625916 NPIPB8E9PQR5 432 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 GJB6O95452 261 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 LTFP02788 710 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 GNAT1P11488 350 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 COL6A2P12110 1019 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 GRK2P25098 689 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 GRK3P35626 688 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 ETFBP38117 255 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 PFKPQ01813 784 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 SLC10A6Q3KNW5 377 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 NRN1LQ496H8 165 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 TAX1BP1Q86VP1 789 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 REXO1L1PQ8IX06 675 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 KCND1Q9NSA2 647 aa4.91□□□□□ -1.62
SCN1A-208ENST00000625916 ZFR2Q9UPR6 939 aaKnown RBP4.91□□□□□ -1.62
SCN1A-208ENST00000625916 A0A1W2PQU0 124 aa4.9□□□□□ -1.63
SCN1A-208ENST00000625916 H0Y858 1186 aa4.9□□□□□ -1.63
SCN1A-208ENST00000625916 DLX3O60479 287 aa4.9□□□□□ -1.63
SCN1A-208ENST00000625916 FOXE3Q13461 319 aa4.9□□□□□ -1.63
SCN1A-208ENST00000625916 FHL2Q14192 279 aa4.9□□□□□ -1.63
SCN1A-208ENST00000625916 USP10Q14694 798 aaKnown RBP4.9□□□□□ -1.63
SCN1A-208ENST00000625916 CD276Q5ZPR3 534 aa4.9□□□□□ -1.63
SCN1A-208ENST00000625916 RSPO2Q6UXX9 243 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-208ENST00000625916 PNPLA5Q7Z6Z6 429 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-208ENST00000625916 UHMK1Q8TAS1 419 aaKnown RBP4.9□□□□□ -1.63
SCN1A-208ENST00000625916 CAPNS1P04632 268 aa4.89□□□□□ -1.63
SCN1A-208ENST00000625916 ZNF888P0CJ79 500 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-208ENST00000625916 TGFB2P61812 414 aa4.89□□□□□ -1.63
SCN1A-208ENST00000625916 KIZQ2M2Z5 673 aa4.89□□□□□ -1.63
SCN1A-208ENST00000625916 RNF207Q6ZRF8 634 aa4.89□□□□□ -1.63
SCN1A-208ENST00000625916 NEIL1Q96FI4 390 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-208ENST00000625916 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.89□□□□□ -1.63
SCN1A-208ENST00000625916 TACO1Q9BSH4 297 aaKnown RBP4.89□□□□□ -1.63
SCN1A-208ENST00000625916 CSRNP2Q9H175 543 aa4.89□□□□□ -1.63
SCN1A-208ENST00000625916 KIAA1522Q9P206 1035 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-208ENST00000625916 DSEQ9UL01 958 aa4.89□□□□□ -1.63
SCN1A-208ENST00000625916 PTPN22Q9Y2R2 807 aa4.89□□□□□ -1.63
SCN1A-208ENST00000625916 R3HCC1Q9Y3T6 440 aaKnown RBP4.89□□□□□ -1.63
SCN1A-208ENST00000625916 ZNF839A8K0R7 811 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 NKRFO15226 690 aaKnown RBP eCLIP4.88□□□□□ -1.63
SCN1A-208ENST00000625916 COMTP21964 271 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 RAC3P60763 192 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 GNL2Q13823 731 aaKnown RBP4.88□□□□□ -1.63
SCN1A-208ENST00000625916 HSP90AA2PQ14568 343 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-208ENST00000625916 USP39Q53GS9 565 aaKnown RBP4.88□□□□□ -1.63
SCN1A-208ENST00000625916 KCNT2Q6UVM3 1135 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 LBX2Q6XYB7 198 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 DCAF4Q8WV16 495 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 CARD11Q9BXL7 1154 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 KATNBL1Q9H079 304 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 TELO2Q9Y4R8 837 aa4.88□□□□□ -1.63
SCN1A-208ENST00000625916 PRODHO43272 600 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 IL18BPO95998 194 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 ABHD18Q0P651 414 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 MIIPQ5JXC2 388 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 AGBL4Q5VU57 503 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 KCTD1Q719H9 257 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 FUKQ8N0W3 1084 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 AARSD1Q9BTE6 412 aaKnown RBP4.87□□□□□ -1.63
SCN1A-208ENST00000625916 ZNF408Q9H9D4 720 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 SLC39A2Q9NP94 309 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 ST7Q9NRC1 585 aa4.87□□□□□ -1.63
SCN1A-208ENST00000625916 ESYT3A0FGR9 886 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 FAM47E-STBD1D6RA91 191 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 CUTAO60888 179 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 ZNF202O95125 648 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 SOD2P04179 222 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 ACO1P21399 889 aaKnown RBP4.86□□□□□ -1.63
SCN1A-208ENST00000625916 POLD1P28340 1107 aa4.86□□□□□ -1.63
SCN1A-208ENST00000625916 ERCC5P28715 1186 aaPredicted RBP4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms