RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 SNUPNO95149 360 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 HIBADHP31937 336 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 ADCY1Q08828 1119 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 DHX34Q14147 1143 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 ZNF653Q96CK0 615 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 SH2D4AQ9H788 454 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 DDX25Q9UHL0 483 aaKnown RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 CAPN11Q9UMQ6 739 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 ZNF711Q9Y462 761 aa9.61□□□□□ -0.87
VCL-206ENST00000623461 USP15Q9Y4E8 981 aaPredicted RBP9.61□□□□□ -0.87
VCL-206ENST00000623461 ERVK-7P63135 1459 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 PRPF3O43395 683 aaKnown RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 CYLC2Q14093 348 aaPredicted RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 JADE1Q6IE81 842 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 CCDC125Q86Z20 511 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 PDP2Q9P2J9 529 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 BAG5Q9UL15 447 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 STAT2P52630 851 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 PTK2Q05397 1052 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 PTGISQ16647 500 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 PROM2Q8N271 834 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 NOD2Q9HC29 1040 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 MAST3O60307 1309 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 ACSL3O95573 720 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 CHRNA3P32297 505 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 LIFRP42702 1097 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 KRT39Q6A163 491 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 TRPM8Q7Z2W7 1104 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 SLC17A8Q8NDX2 589 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 CCDC124Q96CT7 223 aaKnown RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 FAM89AQ96GI7 184 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 SLC52A2Q9HAB3 445 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 SH3BP5O60239 455 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 PDE1BQ01064 536 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 WDR93Q6P2C0 686 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 NFRKBQ6P4R8 1299 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 KDM7AQ6ZMT4 941 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 DNAJC9Q8WXX5 260 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 EDEM3Q9BZQ6 932 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 MRPL47Q9HD33 250 aaKnown RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 HDAC6Q9UBN7 1215 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 A0A0G2JND7 137 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 NVLO15381 856 aaKnown RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 GSTA2P09210 222 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 KAZNQ674X7 775 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 PCGF5Q86SE9 256 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 DBNLQ9UJU6 430 aaKnown RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 PCDHB6Q9Y5E3 794 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 EEF1B2P24534 225 aaKnown RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 LRRC1Q9BTT6 524 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 ATP6V0A4Q9HBG4 840 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 SAP30BPQ9UHR5 308 aaKnown RBP9.6□□□□□ -0.87
VCL-206ENST00000623461 FBXL5Q9UKA1 691 aa9.6□□□□□ -0.87
VCL-206ENST00000623461 A0A1B0GTH6 734 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 H0YCG3 227 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 P4HA1P13674 534 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 BRAFP15056 766 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 KCNA3P22001 575 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 CDC37Q16543 378 aaPredicted RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 FAM178BQ8IXR5 827 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 CD248Q9HCU0 757 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 PPARGC1AQ9UBK2 798 aaKnown RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 IQGAP3Q86VI3 1631 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 PSMD14O00487 310 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 ESRRBO95718 433 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 RGS9BPQ6ZS82 235 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 RDH13Q8NBN7 331 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 SNX24Q9Y343 169 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 BACH1O14867 736 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 MCF2LO15068 1137 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 CCDC22O60826 627 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 PDZD4Q76G19 769 aaPredicted RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 SRRM1Q8IYB3 904 aaKnown RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 XPO6Q96QU8 1125 aaKnown RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 PCDH11XQ9BZA7 1347 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 PCDH11YQ9BZA8 1340 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 M0R2C6 588 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 ARFIP2P53365 341 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 CCDC117Q8IWD4 279 aaPredicted RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 PPM1KQ8N3J5 372 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 MMGT1Q8N4V1 131 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 MMS19Q96T76 1030 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 MLXIPQ9HAP2 919 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 DISC1Q9NRI5 854 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 SENP1Q9P0U3 644 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 APOBEC2Q9Y235 224 aaKnown RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 E7ENQ6 273 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 TNNI1P19237 187 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 LZICQ8WZA0 190 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 SIRT1Q96EB6 747 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 LGR6Q9HBX8 967 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 IL1RAPL1Q9NZN1 696 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 NDUFA13Q9P0J0 144 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 hCG_1984214I3L0E3 225 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 ACADSP16219 412 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 NEK2P51955 445 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 KPNA2P52292 529 aaKnown RBP9.59□□□□□ -0.87
VCL-206ENST00000623461 HDAC4P56524 1084 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 KLHL38Q2WGJ6 581 aa9.59□□□□□ -0.87
VCL-206ENST00000623461 FAM186BQ8IYM0 893 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms