RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 TCP10Q12799 353 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 SNCBQ16143 134 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 CCDC105Q8IYK2 499 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 CASKIN2Q8WXE0 1202 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 MRC1P22897 1456 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 ZNF263O14978 683 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 PRPHP41219 470 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 VPS41P49754 854 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 ZNF211Q13398 564 aaPredicted RBP13.76□□□□□ -0.21
LIG1-221ENST00000613670 SEPT7Q16181 437 aaKnown RBP13.76□□□□□ -0.21
LIG1-221ENST00000613670 SYCE1Q8N0S2 351 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 GLIS3Q8NEA6 775 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 ODF2LQ9ULJ1 636 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 STK38LQ9Y2H1 464 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 RTCBQ9Y3I0 505 aaKnown RBP13.76□□□□□ -0.21
LIG1-221ENST00000613670 MED1Q15648 1581 aaPredicted RBP13.76□□□□□ -0.21
LIG1-221ENST00000613670 GMNCA6NCL1 334 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 NTSR2O95665 410 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 CALCOCO2Q13137 446 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 FAM133BQ5BKY9 247 aaKnown RBP13.76□□□□□ -0.21
LIG1-221ENST00000613670 TTMPQ5BVD1 217 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 PTPN22Q9Y2R2 807 aa13.76□□□□□ -0.21
LIG1-221ENST00000613670 USP17L15C9J2P7 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L13C9JLJ4 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L11C9JVI0 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L18D6R9N7 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L22D6RA61 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L17D6RBQ6 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L19D6RCP7 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L20D6RJB6 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 CAMTA2O94983 1202 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 GTF2IP78347 998 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L24Q0WX57 530 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 USP17L6PQ6QN14 398 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 C3orf67Q6ZVT6 689 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 TNFRSF25Q93038 417 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 MRRFQ96E11 262 aaKnown RBP13.75□□□□□ -0.21
LIG1-221ENST00000613670 NCAPGQ9BPX3 1015 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 RAB17Q9H0T7 212 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 CD248Q9HCU0 757 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 MAD2L2Q9UI95 211 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 ZBTB21Q9ULJ3 1066 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 SNX24Q9Y343 169 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 KDM3BQ7LBC6 1761 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 AFPP02771 609 aaKnown RBP13.75□□□□□ -0.21
LIG1-221ENST00000613670 STAT3P40763 770 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 AFDNP55196 1824 aaKnown RBP13.75□□□□□ -0.21
LIG1-221ENST00000613670 GRIPAP1Q4V328 841 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 KLHDC7AQ5VTJ3 777 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 TPH2Q8IWU9 490 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 GCNT4Q9P109 453 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 A0A1W2PQJ5 194 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 AGPSO00116 658 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 RPS6KA5O75582 802 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 ECM2O94769 699 aaPredicted RBP13.75□□□□□ -0.21
LIG1-221ENST00000613670 TRADDQ15628 312 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 SLC18A3Q16572 532 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 TXNRD3Q86VQ6 643 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 FRMD4BQ9Y2L6 1034 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 DAAM1Q9Y4D1 1078 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 PCDHA1Q9Y5I3 950 aa13.75□□□□□ -0.21
LIG1-221ENST00000613670 PHF20L1A8MW92 1017 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 SLC9A1P19634 815 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 SNAP25P60880 206 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 FMO2Q99518 471 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 CELF4Q9BZC1 486 aaKnown RBP13.74□□□□□ -0.21
LIG1-221ENST00000613670 KDM3AQ9Y4C1 1321 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 A0A1W2PRG0 241 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 CYTH3O43739 400 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 EXOC3O60645 756 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 NPY5RQ15761 445 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 PAXIP1Q6ZW49 1069 aaPredicted RBP13.74□□□□□ -0.21
LIG1-221ENST00000613670 N4BP2L2Q92802 583 aaPredicted RBP13.74□□□□□ -0.21
LIG1-221ENST00000613670 IL17RBQ9NRM6 502 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 INTS9Q9NV88 658 aaKnown RBP13.74□□□□□ -0.21
LIG1-221ENST00000613670 NOC2LQ9Y3T9 749 aaKnown RBP13.74□□□□□ -0.21
LIG1-221ENST00000613670 SSU72P8A0A1W2PR75 194 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 POTEFA5A3E0 1075 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 CHUKO15111 745 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 TTI1O43156 1089 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 KCNQ2O43526 872 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 SLC37A4O43826 429 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 POTEIP0CG38 1075 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 SCNN1DP51172 638 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 PSMD2Q13200 908 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 GRB10Q13322 594 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 PTGISQ16647 500 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 SEL1L2Q5TEA6 688 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 CENPPQ6IPU0 288 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 RCSD1Q6JBY9 416 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 POTEGQ6S5H5 508 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 POTEEQ6S8J3 1075 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 CNBD1Q8NA66 436 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 PBKQ96KB5 322 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 NAP1L3Q99457 506 aaPredicted RBP13.74□□□□□ -0.21
LIG1-221ENST00000613670 KLC4Q9NSK0 619 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 ASIC3Q9UHC3 531 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 BCS1LQ9Y276 419 aa13.74□□□□□ -0.21
LIG1-221ENST00000613670 CTDP1Q9Y5B0 961 aaPredicted RBP13.74□□□□□ -0.21
LIG1-221ENST00000613670 COPB2P35606 906 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms