RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 ESYT3A0FGR9 886 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 SLC37A4O43826 429 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 ZRANB2O95218 330 aaKnown RBP eCLIP9.5□□□□□ -0.89
LIG4-204ENST00000611712 PPP1R7Q15435 360 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 SYDE2Q5VT97 1194 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 PPP4R3CPQ6ZMV5 832 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 RNF10Q8N5U6 811 aaKnown RBP9.5□□□□□ -0.89
LIG4-204ENST00000611712 UBL4BQ8N7F7 174 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 PPANQ9NQ55 473 aaKnown RBP9.5□□□□□ -0.89
LIG4-204ENST00000611712 L1RE1Q9UN81 338 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 PACSIN2Q9UNF0 486 aaPredicted RBP9.5□□□□□ -0.89
LIG4-204ENST00000611712 ATP6V0A2Q9Y487 856 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 E7EVH7 732 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 PPIP5K2O43314 1243 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 MYCLP12524 364 aaPredicted RBP9.5□□□□□ -0.89
LIG4-204ENST00000611712 PSMC2P35998 433 aaKnown RBP9.5□□□□□ -0.89
LIG4-204ENST00000611712 CRKP46108 304 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 CALCOCO2Q13137 446 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 CTTNQ14247 550 aaKnown RBP9.5□□□□□ -0.89
LIG4-204ENST00000611712 MSANTD4Q8NCY6 345 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 PIGOQ8TEQ8 1089 aa9.5□□□□□ -0.89
LIG4-204ENST00000611712 RIN2Q8WYP3 895 aaPredicted RBP9.5□□□□□ -0.89
LIG4-204ENST00000611712 TARSL2A2RTX5 802 aaKnown RBP9.49□□□□□ -0.89
LIG4-204ENST00000611712 KRT5P13647 590 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 FERP16591 822 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 ADRA2BP18089 450 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 HERVK_113P62684 666 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 GRB10Q13322 594 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 DLGAP5Q15398 846 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 TRAPPC11Q7Z392 1133 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 MIER3Q7Z3K6 550 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 SMARCAL1Q9NZC9 954 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 PLAGL2Q9UPG8 496 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 ESYT2A0FGR8 921 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 K7ENM7 598 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 PGRMC1O00264 195 aaKnown RBP9.49□□□□□ -0.89
LIG4-204ENST00000611712 PPP4R3AQ6IN85 833 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 SEPT12Q8IYM1 358 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 TNFRSF25Q93038 417 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 AP1M1Q9BXS5 423 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 RTFDC1Q9BY42 306 aaPredicted RBP9.49□□□□□ -0.89
LIG4-204ENST00000611712 EDEM3Q9BZQ6 932 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 SEMA6BQ9H3T3 888 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 JMJD4Q9H9V9 463 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 LARSQ9P2J5 1176 aaKnown RBP9.49□□□□□ -0.89
LIG4-204ENST00000611712 LRRN2O75325 713 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 GH2P01242 217 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 GAP43P17677 238 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 SMARCA1P28370 1054 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 FXR2P51116 673 aaKnown RBP eCLIP9.49□□□□□ -0.89
LIG4-204ENST00000611712 AP3B2Q13367 1082 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 NNTQ13423 1086 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 MTMR3Q13615 1198 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 NAALADL2Q58DX5 795 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 ALS2CLQ60I27 953 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 CCNI2Q6ZMN8 369 aaPredicted RBP9.49□□□□□ -0.89
LIG4-204ENST00000611712 CCDC114Q96M63 670 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 DUSP9Q99956 384 aaKnown RBP9.49□□□□□ -0.89
LIG4-204ENST00000611712 MXD3Q9BW11 206 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 MRPL11Q9Y3B7 192 aaKnown RBP9.49□□□□□ -0.89
LIG4-204ENST00000611712 CLRN2A0PK11 232 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 F5H6K3 240 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 H3BQF6 201 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 MYO1CO00159 1063 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 LIG3P49916 1009 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 SMTNP53814 917 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 APBA1Q02410 837 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 KLRC3Q07444 240 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 CCDC50Q8IVM0 306 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 RAB17Q9H0T7 212 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 KCPQ6ZWJ8 1503 aa9.49□□□□□ -0.89
LIG4-204ENST00000611712 A0A1W2PQJ5 194 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 PPFIA4O75335 1185 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 KNOP1Q1ED39 458 aaKnown RBP9.48□□□□□ -0.89
LIG4-204ENST00000611712 NSMFQ6X4W1 530 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 TMEM179Q6ZVK1 233 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 LARGE2Q8N3Y3 721 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 DCAF4Q8WV16 495 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 MS4A14Q96JA4 679 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 MED15Q96RN5 788 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 RNF225M0QZC1 329 aaPredicted RBP9.48□□□□□ -0.89
LIG4-204ENST00000611712 ABL1P00519 1130 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 NR3C1P04150 777 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 NPR1P16066 1061 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 LMNB1P20700 586 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 ARHGAP25P42331 645 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 GTF2A1P52655 376 aaPredicted RBP9.48□□□□□ -0.89
LIG4-204ENST00000611712 SF3A3Q12874 501 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIG4-204ENST00000611712 GRIK5Q16478 980 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 CENPPQ6IPU0 288 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 CCDC105Q8IYK2 499 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 MTRQ99707 1265 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 ZNF577Q9BSK1 485 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 TEKT3Q9BXF9 490 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 PARVGQ9HBI0 331 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 SSU72P8A0A1W2PR75 194 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 BACH1O14867 736 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 APBA3O96018 575 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 CTNNA2P26232 953 aa9.48□□□□□ -0.89
LIG4-204ENST00000611712 USP11P51784 963 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms