RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 XIRP2A4UGR9 3374 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 ESYT2A0FGR8 921 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 hCG_1984214I3L0E3 225 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 MEIS2O14770 477 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 EDIL3O43854 480 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 LPXNO60711 386 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 CDKL5O76039 1030 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 GH1P01241 217 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 CLK2P49760 499 aaKnown RBP10.02□□□□□ -0.81
TRIM28-214ENST00000600840 TAP1Q03518 808 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 HIC1Q14526 733 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 TCTN1Q2MV58 587 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 NFRKBQ6P4R8 1299 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 CPLX2Q6PUV4 134 aaKnown RBP10.02□□□□□ -0.81
TRIM28-214ENST00000600840 MCF2L2Q86YR7 1114 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 FAM177A1Q8N128 213 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-214ENST00000600840 ZNF713Q8N859 430 aaPredicted RBP10.02□□□□□ -0.81
TRIM28-214ENST00000600840 DHX38Q92620 1227 aaKnown RBP10.02□□□□□ -0.81
TRIM28-214ENST00000600840 IWS1Q96ST2 819 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 PHOX2BQ99453 314 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 PDCD2LQ9BRP1 358 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 PHF20Q9BVI0 1012 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 SEZ6LQ9BYH1 1024 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 ZMYND12Q9H0C1 365 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 TELO2Q9Y4R8 837 aa10.02□□□□□ -0.81
TRIM28-214ENST00000600840 PIK3CDO00329 1044 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 EIF3JO75822 258 aaKnown RBP10.01□□□□□ -0.81
TRIM28-214ENST00000600840 IQCF3P0C7M6 154 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 MYCLP12524 364 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-214ENST00000600840 IL9P15248 144 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 GJB2P29033 226 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 HMGN5P82970 282 aaKnown RBP10.01□□□□□ -0.81
TRIM28-214ENST00000600840 ZNF200P98182 395 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-214ENST00000600840 PGM5Q15124 567 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 VSIG10LQ86VR7 867 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 HSCBQ8IWL3 235 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 TRIM22Q8IYM9 498 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 GJD3Q8N144 294 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 SAMD3Q8N6K7 520 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 FBXO18Q8NFZ0 1043 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 TNFRSF25Q93038 417 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 WNT8BQ93098 351 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 ALG1Q9BT22 464 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 VPS54Q9P1Q0 977 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 HDAC6Q9UBN7 1215 aa10.01□□□□□ -0.81
TRIM28-214ENST00000600840 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-214ENST00000600840 B4DLN1 442 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 HAS3O00219 553 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 KPNA6O60684 536 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 SUPT20HL2P0C7V6 817 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 ZNF286BP0CG31 522 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 SSTR3P32745 418 aaPredicted RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 MRPL12P52815 198 aaKnown RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 MRPS9P82933 396 aaKnown RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 TRAF1Q13077 416 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 PTGISQ16647 500 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 HSDL1Q3SXM5 330 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 PPP1R18Q6NYC8 613 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 HEATR3Q7Z4Q2 680 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 TMCO2Q7Z6W1 182 aaPredicted RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 FCHSD1Q86WN1 690 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 TEX2Q8IWB9 1127 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 FAM178BQ8IXR5 827 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 RPUSD2Q8IZ73 545 aaKnown RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 DAGLBQ8NCG7 672 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 GDPD5Q8WTR4 605 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 CRYGNQ8WXF5 182 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 MPHOSPH6Q99547 160 aaKnown RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 RIC8AQ9NPQ8 531 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 MAP3K20Q9NYL2 800 aaKnown RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 SEC63Q9UGP8 760 aaKnown RBP10□□□□□ -0.81
TRIM28-214ENST00000600840 MRVI1Q9Y6F6 885 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 PIEZO1Q92508 2521 aa10□□□□□ -0.81
TRIM28-214ENST00000600840 LCHNA4D1U4 455 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 SMCO2A6NFE2 343 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 PSEN2P49810 448 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 PTPN11Q06124 597 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-214ENST00000600840 SEMA3FQ13275 785 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 CSPP1Q1MSJ5 1256 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 BRDTQ58F21 947 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-214ENST00000600840 MYSM1Q5VVJ2 828 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 TRAF7Q6Q0C0 670 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 USP17L6PQ6QN14 398 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 SESTD1Q86VW0 696 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 DHX37Q8IY37 1157 aaKnown RBP9.99□□□□□ -0.81
TRIM28-214ENST00000600840 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-214ENST00000600840 OXER1Q8TDS5 423 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 WASF1Q92558 559 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 EMID1Q96A84 441 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-214ENST00000600840 OSBPL7Q9BZF2 842 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 UBE2ZQ9H832 354 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-214ENST00000600840 PSTPIP2Q9H939 334 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 GTF2IRD1Q9UHL9 959 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 KCNJ14Q9UNX9 436 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 SMC3Q9UQE7 1217 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 BRWD1Q9NSI6 2320 aa9.99□□□□□ -0.81
TRIM28-214ENST00000600840 GCOM1H8Y6P7 765 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-214ENST00000600840 PITPNM1O00562 1244 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 NBNO60934 754 aa9.98□□□□□ -0.81
TRIM28-214ENST00000600840 GGPS1O95749 300 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms