RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 TCF7P36402 384 aaPredicted RBP13.89□□□□□ -0.19
LIG1-217ENST00000599165 ARHGAP4P98171 946 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 NPY5RQ15761 445 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 CEP55Q53EZ4 464 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 ZNF618Q5T7W0 954 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 UTP14CQ5TAP6 766 aaKnown RBP13.89□□□□□ -0.19
LIG1-217ENST00000599165 LRRC8DQ7L1W4 858 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 RPUSD2Q8IZ73 545 aaKnown RBP13.89□□□□□ -0.19
LIG1-217ENST00000599165 ZNF274Q96GC6 653 aaPredicted RBP13.89□□□□□ -0.19
LIG1-217ENST00000599165 CDHR1Q96JP9 859 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 AIFM3Q96NN9 605 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 CDX2Q99626 313 aaPredicted RBP13.89□□□□□ -0.19
LIG1-217ENST00000599165 SLC26A6Q9BXS9 759 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 AGO4Q9HCK5 861 aaKnown RBP13.89□□□□□ -0.19
LIG1-217ENST00000599165 PDRG1Q9NUG6 133 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 VPS54Q9P1Q0 977 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 NOD1Q9Y239 953 aa13.89□□□□□ -0.19
LIG1-217ENST00000599165 TMEM265A0A087WTH1 108 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 MAFGO15525 162 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 LGR5O75473 907 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 CCNE2O96020 404 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 CYP3A4P08684 503 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 MYOGP15173 224 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 MKRN4PQ13434 485 aaPredicted RBP13.88□□□□□ -0.19
LIG1-217ENST00000599165 GRIN2CQ14957 1233 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 RETREG2Q8NC44 543 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 GIMAP8Q8ND71 665 aaPredicted RBP13.88□□□□□ -0.19
LIG1-217ENST00000599165 LMBR1Q8WVP7 490 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 SETD4Q9NVD3 440 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 TPCN1Q9ULQ1 816 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 NFASCO94856 1347 aa13.88□□□□□ -0.19
LIG1-217ENST00000599165 C17orf102A2RUQ5 167 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 M0R2N6 131 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 DHX15O43143 795 aaKnown RBP13.87□□□□□ -0.19
LIG1-217ENST00000599165 CTDNEP1O95476 244 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 RABGGTBP53611 331 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 ANAPC15P60006 121 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 SCRN1Q12765 414 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 STK3Q13188 491 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 NIPA1Q7RTP0 329 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 SEPT1Q8WYJ6 367 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 LENG9Q96B70 501 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 TIFAQ96CG3 184 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 GLT8D2Q9H1C3 349 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 JPH1Q9HDC5 661 aaPredicted RBP13.87□□□□□ -0.19
LIG1-217ENST00000599165 LOXHD1Q8IVV2 1947 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 EMSYQ7Z589 1322 aa13.87□□□□□ -0.19
LIG1-217ENST00000599165 MYH9P35579 1960 aaKnown RBP13.86□□□□□ -0.19
LIG1-217ENST00000599165 ARHGEF15O94989 841 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 ATG7O95352 703 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 LARGE1O95461 756 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 AK2P54819 239 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 ACTR2P61160 394 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 MARCH8Q5T0T0 291 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 REXO1Q8N1G1 1221 aaKnown RBP13.86□□□□□ -0.19
LIG1-217ENST00000599165 CCDC155Q8N6L0 562 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 MYLIPQ8WY64 445 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 ATP6V0A1Q93050 837 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 ZBTB10Q96DT7 871 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 UIMC1Q96RL1 719 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 ZNF576Q9H609 170 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 EHMT1Q9H9B1 1298 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 C6orf50Q9HD87 102 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 SLC9A2Q9UBY0 812 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 SLC4A7Q9Y6M7 1214 aa13.86□□□□□ -0.19
LIG1-217ENST00000599165 IGKV6D-21A0A0A0MT36 114 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 MARK3P27448 753 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 CIITAP33076 1130 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 ST3GAL1Q11201 340 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 RUFY4Q6ZNE9 571 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 TMCO2Q7Z6W1 182 aaPredicted RBP13.85□□□□□ -0.19
LIG1-217ENST00000599165 PLA2G4DQ86XP0 818 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 NKX2-4Q9H2Z4 354 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 SH3GLB2Q9NR46 395 aa13.85□□□□□ -0.19
LIG1-217ENST00000599165 PRUNE2Q8WUY3 3088 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 MBLAC1A4D2B0 266 aaPredicted RBP13.84□□□□□ -0.19
LIG1-217ENST00000599165 ZBBXA8MT70 800 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 PFKFB2O60825 505 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 ATP2A2P16615 1042 aaKnown RBP13.84□□□□□ -0.19
LIG1-217ENST00000599165 GNA11P29992 359 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 THPOP40225 353 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 WDR5P61964 334 aaKnown RBP13.84□□□□□ -0.19
LIG1-217ENST00000599165 DEFB103AP81534 67 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 C8orf34Q49A92 452 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 CCDC12Q8WUD4 166 aaPredicted RBP13.84□□□□□ -0.19
LIG1-217ENST00000599165 FTOQ9C0B1 505 aaKnown RBP eCLIP13.84□□□□□ -0.19
LIG1-217ENST00000599165 MTIF3Q9H2K0 278 aaKnown RBP13.84□□□□□ -0.19
LIG1-217ENST00000599165 GJB4Q9NTQ9 266 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 ZNF215Q9UL58 517 aaPredicted RBP13.84□□□□□ -0.19
LIG1-217ENST00000599165 EVPLQ92817 2033 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 NRCAMQ92823 1304 aa13.84□□□□□ -0.19
LIG1-217ENST00000599165 UNC80Q8N2C7 3258 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 DDX39AO00148 427 aaKnown RBP13.83□□□□□ -0.2
LIG1-217ENST00000599165 BAIAP3O94812 1187 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 DEXIO95424 95 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 FDPSP14324 419 aaKnown RBP13.83□□□□□ -0.2
LIG1-217ENST00000599165 ATP4AP20648 1035 aa13.83□□□□□ -0.2
LIG1-217ENST00000599165 AKAP17AQ02040 695 aaKnown RBP13.83□□□□□ -0.2
LIG1-217ENST00000599165 SSRP1Q08945 709 aaKnown RBP13.83□□□□□ -0.2
LIG1-217ENST00000599165 MGAT3Q09327 533 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms