RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 GOLGA8AA7E2F4 631 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 GOLGA8BA8MQT2 603 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 LPXNO60711 386 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 STAM2O75886 525 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 TOB2Q14106 344 aaPredicted RBP12.03□□□□□ -0.48
LIG1-213ENST00000596672 NEDD9Q14511 834 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 GNPTABQ3T906 1256 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 RNF20Q5VTR2 975 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 XRRA1Q6P2D8 792 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 DBF4BQ8NFT6 615 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 LMBR1Q8WVP7 490 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 GPRASP2Q96D09 838 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 NCOA5Q9HCD5 579 aaKnown RBP12.03□□□□□ -0.48
LIG1-213ENST00000596672 JADE2Q9NQC1 790 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 BARHL2Q9NY43 387 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 NID2Q14112 1375 aa12.03□□□□□ -0.48
LIG1-213ENST00000596672 C17orf102A2RUQ5 167 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 LGR5O75473 907 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 CCNE2O96020 404 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 CHRNA1P02708 482 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 RPS6KB1P23443 525 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 TCF7P36402 384 aaPredicted RBP12.02□□□□□ -0.49
LIG1-213ENST00000596672 THPOP40225 353 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 CCDC85BQ15834 202 aaPredicted RBP12.02□□□□□ -0.49
LIG1-213ENST00000596672 FBXL16Q8N461 479 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 PPM1EQ8WY54 764 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 CUL5Q93034 780 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 ATP6V0A1Q93050 837 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 PHKBQ93100 1093 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 MXRA8Q9BRK3 442 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 KATNAL1Q9BW62 490 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 USP26Q9BXU7 913 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 ANO3Q9BYT9 981 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 SLC28A3Q9HAS3 691 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 KCNH7Q9NS40 1196 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 RBM28Q9NW13 759 aaKnown RBP12.02□□□□□ -0.49
LIG1-213ENST00000596672 COL4A4P53420 1690 aaPredicted RBP12.02□□□□□ -0.49
LIG1-213ENST00000596672 COL4A6Q14031 1691 aa12.02□□□□□ -0.49
LIG1-213ENST00000596672 IGLV3-22A0A075B6J6 115 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.01□□□□□ -0.49
LIG1-213ENST00000596672 SMCO2A6NFE2 343 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 FAM86B1E9PN63 330 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 MEIS1O00470 390 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 DHX15O43143 795 aaKnown RBP12.01□□□□□ -0.49
LIG1-213ENST00000596672 CTSHP09668 335 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 FAM86B2P0C5J1 330 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 PDIA3P30101 505 aaKnown RBP12.01□□□□□ -0.49
LIG1-213ENST00000596672 NAPAP54920 295 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 EVCP57679 992 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 PFKFB3Q16875 520 aaPredicted RBP12.01□□□□□ -0.49
LIG1-213ENST00000596672 PLEKHG4Q58EX7 1191 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 JAKMIP3Q5VZ66 844 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 PPP2R2DQ66LE6 453 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 CNKSR3Q6P9H4 555 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 PHOSPHO2Q8TCD6 241 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 RASGRP4Q8TDF6 673 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 SLC9A7Q96T83 725 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 MTIF3Q9H2K0 278 aaKnown RBP12.01□□□□□ -0.49
LIG1-213ENST00000596672 ATG2AQ2TAZ0 1938 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 TTC3P53804 2025 aa12.01□□□□□ -0.49
LIG1-213ENST00000596672 RSPH10B2B2RC85 870 aa12□□□□□ -0.49
LIG1-213ENST00000596672 NOP56O00567 594 aaKnown RBP12□□□□□ -0.49
LIG1-213ENST00000596672 BAIAP3O94812 1187 aa12□□□□□ -0.49
LIG1-213ENST00000596672 RSPH10BP0C881 870 aa12□□□□□ -0.49
LIG1-213ENST00000596672 ATP4AP20648 1035 aa12□□□□□ -0.49
LIG1-213ENST00000596672 MARK3P27448 753 aa12□□□□□ -0.49
LIG1-213ENST00000596672 SREBF1P36956 1147 aa12□□□□□ -0.49
LIG1-213ENST00000596672 ADCY7P51828 1080 aa12□□□□□ -0.49
LIG1-213ENST00000596672 ARHGAP4P98171 946 aa12□□□□□ -0.49
LIG1-213ENST00000596672 MGAT3Q09327 533 aa12□□□□□ -0.49
LIG1-213ENST00000596672 MTMR1Q13613 665 aa12□□□□□ -0.49
LIG1-213ENST00000596672 KRT32Q14532 448 aa12□□□□□ -0.49
LIG1-213ENST00000596672 FAM26DQ5JW98 314 aa12□□□□□ -0.49
LIG1-213ENST00000596672 FAM117BQ6P1L5 589 aa12□□□□□ -0.49
LIG1-213ENST00000596672 NLRX1Q86UT6 975 aa12□□□□□ -0.49
LIG1-213ENST00000596672 TRAPPC12Q8WVT3 735 aa12□□□□□ -0.49
LIG1-213ENST00000596672 SEPT1Q8WYJ6 367 aa12□□□□□ -0.49
LIG1-213ENST00000596672 ZSWIM6Q9HCJ5 1215 aa12□□□□□ -0.49
LIG1-213ENST00000596672 AGO4Q9HCK5 861 aaKnown RBP12□□□□□ -0.49
LIG1-213ENST00000596672 MTCH2Q9Y6C9 303 aa12□□□□□ -0.49
LIG1-213ENST00000596672 MBLAC1A4D2B0 266 aaPredicted RBP11.99□□□□□ -0.49
LIG1-213ENST00000596672 SPDYE3A6NKU9 549 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 PRPF3O43395 683 aaKnown RBP11.99□□□□□ -0.49
LIG1-213ENST00000596672 ATG7O95352 703 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 GJB5O95377 273 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 ACTN1P12814 892 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 SCG2P13521 617 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 IGFBP4P22692 258 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 METAP2P50579 478 aaKnown RBP eCLIP11.99□□□□□ -0.49
LIG1-213ENST00000596672 RCAN1P53805 252 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 ACTR2P61160 394 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 CCT2P78371 535 aaKnown RBP11.99□□□□□ -0.49
LIG1-213ENST00000596672 GRB10Q13322 594 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 PLCB4Q15147 1175 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 NPY5RQ15761 445 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 CEP55Q53EZ4 464 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 PPP1R18Q6NYC8 613 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 BLOC1S2Q6QNY1 142 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 SYNE3Q6ZMZ3 975 aa11.99□□□□□ -0.49
LIG1-213ENST00000596672 CCDC155Q8N6L0 562 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms