RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 MRPS25P82663 173 aaKnown RBP11.95□□□□□ -0.5
VPS4B-206ENST00000591475 APBA1Q02410 837 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 GFPT1Q06210 699 aaPredicted RBP11.95□□□□□ -0.5
VPS4B-206ENST00000591475 CXCL9Q07325 125 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 PSMD2Q13200 908 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 TNIP1Q15025 636 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 CALCRLQ16602 461 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 FOXR2Q6PJQ5 311 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 DYMQ7RTS9 669 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 REXO1Q8N1G1 1221 aaKnown RBP11.95□□□□□ -0.5
VPS4B-206ENST00000591475 MICALL1Q8N3F8 863 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 OGFOD1Q8N543 542 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 AGBL3Q8NEM8 1001 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 ZDHHC15Q96MV8 337 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 PNMA5Q96PV4 448 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 RAB34Q9BZG1 259 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 RIC8AQ9NPQ8 531 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 SALL4Q9UJQ4 1053 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 FAM169AQ9Y6X4 670 aa11.95□□□□□ -0.5
VPS4B-206ENST00000591475 RBAK-RBAKDNI3L0D1 243 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 RASA1P20936 1047 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 SMARCA1P28370 1054 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 SLC1A4P43007 532 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 NAP1L1P55209 391 aaKnown RBP11.94□□□□□ -0.5
VPS4B-206ENST00000591475 PAK2Q13177 524 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 SLC9C1Q4G0N8 1177 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 TDRD12Q587J7 1177 aaKnown RBP11.94□□□□□ -0.5
VPS4B-206ENST00000591475 TTMPQ5BVD1 217 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 CIAPIN1Q6FI81 312 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 LRRC55Q6ZSA7 311 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 ANKRD13CQ8N6S4 541 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 SLC44A5Q8NCS7 719 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 ARL8AQ96BM9 186 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 MTMR8Q96EF0 704 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 MTMR9Q96QG7 549 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 TANGO6Q9C0B7 1094 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 CPVLQ9H3G5 476 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 CEP72Q9P209 647 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 DDX60LQ5H9U9 1706 aaKnown RBP11.94□□□□□ -0.5
VPS4B-206ENST00000591475 ESYT2A0FGR8 921 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 BUB1O43683 1085 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 SERPING1P05155 500 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 LMNB1P20700 586 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 RHBDL3P58872 404 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 CFAP58Q5T655 872 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 HGSNATQ68CP4 663 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 TEX11Q8IYF3 940 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 TGFBRAP1Q8WUH2 860 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 RAD54LQ92698 747 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 SYN2Q92777 582 aaPredicted RBP11.94□□□□□ -0.5
VPS4B-206ENST00000591475 ZIM3Q96PE6 472 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 GMLQ99445 158 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 EHD4Q9H223 541 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 GDF3Q9NR23 364 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 BIN2Q9UBW5 565 aaPredicted RBP11.94□□□□□ -0.5
VPS4B-206ENST00000591475 HDAC9Q9UKV0 1011 aa11.94□□□□□ -0.5
VPS4B-206ENST00000591475 GRID2IPA4D2P6 1211 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 FZD9O00144 591 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 ERLIN2O94905 339 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 MMP14P50281 582 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 GTF2A1P52655 376 aaPredicted RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 RBM5P52756 815 aaKnown RBP eCLIP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 EIF6P56537 245 aaKnown RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 ATP2B2Q01814 1243 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 SFMBT2Q5VUG0 894 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 APOBEC3HQ6NTF7 200 aaKnown RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 GPIHBP1Q8IV16 184 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 MS4A14Q96JA4 679 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 MYH7BA7E2Y1 1941 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 hCG_1984214I3L0E3 225 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 HEXIM1O94992 359 aaKnown RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 PRELPP51888 382 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 KCNMA1Q12791 1236 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 PDIA5Q14554 519 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 KRT79Q5XKE5 535 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 USP17L2Q6R6M4 530 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 B4GALNT4Q76KP1 1039 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 MYOCDQ8IZQ8 938 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 ZNF713Q8N859 430 aaPredicted RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 CCDC43Q96MW1 224 aaKnown RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 PIGSQ96S52 555 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 VAT1LQ9HCJ6 419 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 TMEM260Q9NX78 707 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 SAP30BPQ9UHR5 308 aaKnown RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 ZBTB12Q9Y330 459 aaPredicted RBP11.93□□□□□ -0.5
VPS4B-206ENST00000591475 COL4A3BPQ9Y5P4 624 aa11.93□□□□□ -0.5
VPS4B-206ENST00000591475 MYH4Q9Y623 1939 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 ZNF646O15015 1829 aaPredicted RBP11.92□□□□□ -0.5
VPS4B-206ENST00000591475 GLI1P08151 1106 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 RPS12P25398 132 aaKnown RBP11.92□□□□□ -0.5
VPS4B-206ENST00000591475 CARSP49589 748 aaKnown RBP11.92□□□□□ -0.5
VPS4B-206ENST00000591475 FKBP3Q00688 224 aaKnown RBP11.92□□□□□ -0.5
VPS4B-206ENST00000591475 EHHADHQ08426 723 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 SEPT2Q15019 361 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 NAB2Q15742 525 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 CCDC40Q4G0X9 1142 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 TTC19Q6DKK2 380 aaPredicted RBP11.92□□□□□ -0.5
VPS4B-206ENST00000591475 KDM7AQ6ZMT4 941 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 MMS22LQ6ZRQ5 1243 aa11.92□□□□□ -0.5
VPS4B-206ENST00000591475 SPATS2Q86XZ4 545 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms