RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 EPC2Q52LR7 807 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 FBXO22Q8NEZ5 403 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 SEPT8Q92599 483 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 APBB2Q92870 758 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 GPRASP2Q96D09 838 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 RRP36Q96EU6 259 aaKnown RBP13.53□□□□□ -0.24
CLIP3-204ENST00000590559 SAMD11Q96NU1 681 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 LZTS2Q9BRK4 669 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 LSG1Q9H089 658 aaKnown RBP13.53□□□□□ -0.24
CLIP3-204ENST00000590559 RC3H2Q9HBD1 1191 aaKnown RBP13.53□□□□□ -0.24
CLIP3-204ENST00000590559 C11orf16Q9NQ32 467 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 SUPT16HQ9Y5B9 1047 aaKnown RBP13.53□□□□□ -0.24
CLIP3-204ENST00000590559 NRCAMQ92823 1304 aa13.53□□□□□ -0.24
CLIP3-204ENST00000590559 GSTTP1A0A1W2PQM5 241 aa13.52□□□□□ -0.25
CLIP3-204ENST00000590559 MBLAC1A4D2B0 266 aaPredicted RBP13.52□□□□□ -0.25
CLIP3-204ENST00000590559 CTSHP09668 335 aa13.52□□□□□ -0.25
CLIP3-204ENST00000590559 ITGB5P18084 799 aa13.52□□□□□ -0.25
CLIP3-204ENST00000590559 KIF5BP33176 963 aa13.52□□□□□ -0.25
CLIP3-204ENST00000590559 GIMAP8Q8ND71 665 aaPredicted RBP13.52□□□□□ -0.25
CLIP3-204ENST00000590559 CTCFLQ8NI51 663 aaPredicted RBP13.52□□□□□ -0.25
CLIP3-204ENST00000590559 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.52□□□□□ -0.25
CLIP3-204ENST00000590559 SMARCC2Q8TAQ2 1214 aa13.52□□□□□ -0.25
CLIP3-204ENST00000590559 PIBF1Q8WXW3 757 aa13.52□□□□□ -0.25
CLIP3-204ENST00000590559 MRPL38Q96DV4 380 aaKnown RBP13.52□□□□□ -0.25
CLIP3-204ENST00000590559 ZNF215Q9UL58 517 aaPredicted RBP13.52□□□□□ -0.25
CLIP3-204ENST00000590559 UBIAD1Q9Y5Z9 338 aa13.52□□□□□ -0.25
CLIP3-204ENST00000590559 PRC1O43663 620 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 TCF7P36402 384 aaPredicted RBP13.51□□□□□ -0.25
CLIP3-204ENST00000590559 NECTIN1Q15223 517 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 MARCH8Q5T0T0 291 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 UTP14CQ5TAP6 766 aaKnown RBP13.51□□□□□ -0.25
CLIP3-204ENST00000590559 RUFY4Q6ZNE9 571 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 NLRX1Q86UT6 975 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 TMTC2Q8N394 836 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 NEK9Q8TD19 979 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 CUL5Q93034 780 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 TMEM87BQ96K49 555 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 LRFN3Q9BTN0 628 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 MYO7AQ13402 2215 aa13.51□□□□□ -0.25
CLIP3-204ENST00000590559 C5orf67F2Z3F1 127 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 PI4K2BG5E9Z4 385 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 GPR37L1O60883 481 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 MCM5P33992 734 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 PLA2G5P39877 138 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 GNAQP50148 359 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 ARHGAP4P98171 946 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 CASC1Q6TDU7 716 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 SGMS1Q86VZ5 419 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 FAM178BQ8IXR5 827 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 TMEM192Q8IY95 271 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 CMTR1Q8N1G2 835 aaKnown RBP13.5□□□□□ -0.25
CLIP3-204ENST00000590559 CRIPAKQ8N1N5 446 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 ZNF689Q96CS4 500 aaPredicted RBP13.5□□□□□ -0.25
CLIP3-204ENST00000590559 PCYT2Q99447 389 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 IFIH1Q9BYX4 1025 aaKnown RBP13.5□□□□□ -0.25
CLIP3-204ENST00000590559 PSTPIP2Q9H939 334 aa13.5□□□□□ -0.25
CLIP3-204ENST00000590559 ARIH1Q9Y4X5 557 aaPredicted RBP13.5□□□□□ -0.25
CLIP3-204ENST00000590559 GRXCR2A6NFK2 248 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 SLC27A2O14975 620 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 MAFGO15525 162 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 UPP2O95045 317 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 RXRAP19793 462 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 LPIN1Q14693 890 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 TAF2Q6P1X5 1199 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 TMTC3Q6ZXV5 915 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 SEPT1Q8WYJ6 367 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 CLP1Q92989 425 aaKnown RBP13.49□□□□□ -0.25
CLIP3-204ENST00000590559 CDHR1Q96JP9 859 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 YME1L1Q96TA2 773 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 JADE2Q9NQC1 790 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 SEC63Q9UGP8 760 aaKnown RBP13.49□□□□□ -0.25
CLIP3-204ENST00000590559 WDR81Q562E7 1941 aa13.49□□□□□ -0.25
CLIP3-204ENST00000590559 ENPP3O14638 875 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 CALM1P0DP23 149 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 CALM2P0DP24 149 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 CALM3P0DP25 149 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 IL9P15248 144 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 KCNA5P22460 613 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 SP4Q02446 784 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 FUT2Q10981 343 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 GPM6BQ13491 265 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 GRIK4Q16099 956 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 UBE2SQ16763 222 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 PTPROQ16827 1216 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 TIGD5Q53EQ6 642 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 FBXO47Q5MNV8 452 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 CREB3L3Q68CJ9 461 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 FANCBQ8NB91 859 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 ESYT1Q9BSJ8 1104 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 ERAP1Q9NZ08 941 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 PCDHA6Q9UN73 950 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 PCDHA8Q9Y5H6 950 aa13.48□□□□□ -0.25
CLIP3-204ENST00000590559 hCG_1642624A0A1W2PR95 340 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 CCDC69A6NI79 296 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 GHRP10912 638 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 LTBRP36941 435 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 PPFIA1Q13136 1202 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 MTMR1Q13613 665 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 CTC1Q2NKJ3 1217 aa13.47□□□□□ -0.25
CLIP3-204ENST00000590559 TYW1BQ6NUM6 668 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms