RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 DHX8Q14562 1220 aaKnown RBP28.17■■■□□ 2.1
SHMT1-207ENST00000580002 MIER3Q7Z3K6 550 aa28.17■■■□□ 2.1
SHMT1-207ENST00000580002 HYIQ5T013 277 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 GJC2Q5T442 439 aaPredicted RBP28.16■■■□□ 2.1
SHMT1-207ENST00000580002 GAS2L3Q86XJ1 694 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 BANK1Q8NDB2 785 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 CDHR1Q96JP9 859 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 BLZF1Q9H2G9 400 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 TSKSQ9UJT2 592 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 DDX41Q9UJV9 622 aaKnown RBP28.16■■■□□ 2.1
SHMT1-207ENST00000580002 HSPA6P17066 643 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 RPA1P27694 616 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 FCGRTP55899 365 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 MCM6Q14566 821 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 EPHA7Q15375 998 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 CCDC62Q6P9F0 684 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 TPH2Q8IWU9 490 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 CEP57L1Q8IYX8 460 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 CDK5RAP3Q96JB5 506 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 MPHOSPH6Q99547 160 aaKnown RBP28.16■■■□□ 2.1
SHMT1-207ENST00000580002 CFHR5Q9BXR6 569 aa28.16■■■□□ 2.1
SHMT1-207ENST00000580002 HOXC6P09630 235 aa28.15■■■□□ 2.1
SHMT1-207ENST00000580002 SAMM50Q9Y512 469 aa28.15■■■□□ 2.1
SHMT1-207ENST00000580002 NFASCO94856 1347 aa28.15■■■□□ 2.1
SHMT1-207ENST00000580002 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.14■■■□□ 2.1
SHMT1-207ENST00000580002 CYP2C19P33261 490 aa28.14■■■□□ 2.1
SHMT1-207ENST00000580002 C1QTNF8P60827 252 aa28.14■■■□□ 2.1
SHMT1-207ENST00000580002 UGCGQ16739 394 aa28.14■■■□□ 2.1
SHMT1-207ENST00000580002 ISM2Q6H9L7 571 aa28.14■■■□□ 2.1
SHMT1-207ENST00000580002 CD99L2Q8TCZ2 262 aa28.14■■■□□ 2.1
SHMT1-207ENST00000580002 ANP32EQ9BTT0 268 aa28.14■■■□□ 2.1
SHMT1-207ENST00000580002 JPH1Q9HDC5 661 aaPredicted RBP28.14■■■□□ 2.1
SHMT1-207ENST00000580002 ZNF236Q9UL36 1845 aa28.14■■■□□ 2.09
SHMT1-207ENST00000580002 ADCYAP1R1P41586 468 aa28.14■■■□□ 2.09
SHMT1-207ENST00000580002 POSTNQ15063 836 aa28.14■■■□□ 2.09
SHMT1-207ENST00000580002 ERMNQ8TAM6 284 aa28.14■■■□□ 2.09
SHMT1-207ENST00000580002 POLR3CQ9BUI4 534 aaPredicted RBP28.14■■■□□ 2.09
SHMT1-207ENST00000580002 SLC9A2Q9UBY0 812 aa28.14■■■□□ 2.09
SHMT1-207ENST00000580002 PCDHA5Q9Y5H7 936 aa28.14■■■□□ 2.09
SHMT1-207ENST00000580002 MGAMO43451 1857 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 LOC102724159A0A0B4J2E5 919 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 GGPS1O95749 300 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 RGS2P41220 211 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 ZNF445P59923 1031 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 PRKCZQ05513 592 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 CUL4BQ13620 913 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 PWP2Q15269 919 aaKnown RBP28.13■■■□□ 2.09
SHMT1-207ENST00000580002 RAD54LQ92698 747 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 SENP7Q9BQF6 1050 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 FUCA2Q9BTY2 467 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 KIAA1468Q9P260 1216 aa28.13■■■□□ 2.09
SHMT1-207ENST00000580002 GPR25O00155 361 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 BIN1O00499 593 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 FARP2O94887 1054 aaPredicted RBP28.12■■■□□ 2.09
SHMT1-207ENST00000580002 TXNP10599 105 aaKnown RBP28.12■■■□□ 2.09
SHMT1-207ENST00000580002 FLT3LGP49771 235 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 ACTR2P61160 394 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 KRT76Q01546 638 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 HAUS3Q68CZ6 603 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 PIGOQ8TEQ8 1089 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 KBTBD4Q9NVX7 518 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 SLC5A4Q9NY91 659 aa28.12■■■□□ 2.09
SHMT1-207ENST00000580002 CTAGE5O15320 804 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 TRMT1LQ7Z2T5 733 aaKnown RBP28.11■■■□□ 2.09
SHMT1-207ENST00000580002 USP25Q9UHP3 1055 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 CENPFP49454 3210 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 ADCY6O43306 1168 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 TGFB3P10600 412 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 ACVR2BQ13705 512 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 ZNF746Q6NUN9 644 aaPredicted RBP28.11■■■□□ 2.09
SHMT1-207ENST00000580002 SOCS4Q8WXH5 440 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 APBA2Q99767 749 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 LXNQ9BS40 222 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 VTA1Q9NP79 307 aa28.11■■■□□ 2.09
SHMT1-207ENST00000580002 ZHX1Q9UKY1 873 aaPredicted RBP28.11■■■□□ 2.09
SHMT1-207ENST00000580002 THSD7BQ9C0I4 1608 aa28.1■■■□□ 2.09
SHMT1-207ENST00000580002 IGHA2P01877 340 aa28.1■■■□□ 2.09
SHMT1-207ENST00000580002 LRSAM1Q6UWE0 723 aa28.1■■■□□ 2.09
SHMT1-207ENST00000580002 LARP4BQ92615 738 aaKnown RBP28.1■■■□□ 2.09
SHMT1-207ENST00000580002 TUFT1Q9NNX1 390 aa28.1■■■□□ 2.09
SHMT1-207ENST00000580002 SYNGAP1Q96PV0 1343 aa28.1■■■□□ 2.09
SHMT1-207ENST00000580002 KDM3AQ9Y4C1 1321 aa28.1■■■□□ 2.09
SHMT1-207ENST00000580002 GSTTP1A0A1W2PQM5 241 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 TMEM150BA6NC51 233 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 WDR64B1ANS9 1081 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 DPYDQ12882 1025 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 CELF3Q5SZQ8 465 aaKnown RBP28.09■■■□□ 2.09
SHMT1-207ENST00000580002 ABHD15Q6UXT9 468 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 ELOA2Q8IYF1 753 aaPredicted RBP28.09■■■□□ 2.09
SHMT1-207ENST00000580002 PYM1Q9BRP8 204 aaKnown RBP28.09■■■□□ 2.09
SHMT1-207ENST00000580002 NT5C3AQ9H0P0 336 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 RBM47A0AV96 593 aaKnown RBP28.09■■■□□ 2.09
SHMT1-207ENST00000580002 LETM1O95202 739 aaPredicted RBP28.09■■■□□ 2.09
SHMT1-207ENST00000580002 SSBP05455 408 aaKnown RBP eCLIP28.09■■■□□ 2.09
SHMT1-207ENST00000580002 HSDL1Q3SXM5 330 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 SWSAP1Q6NVH7 229 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 KANK3Q6NY19 840 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 SCFD2Q8WU76 684 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 MLXIPQ9HAP2 919 aa28.09■■■□□ 2.09
SHMT1-207ENST00000580002 STK17AQ9UEE5 414 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms