RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 CPLX2Q6PUV4 134 aaKnown RBP17.69■□□□□ 0.42
SF3B3-215ENST00000577085 REXO1Q8N1G1 1221 aaKnown RBP17.69■□□□□ 0.42
SF3B3-215ENST00000577085 MAFAQ8NHW3 353 aaPredicted RBP17.69■□□□□ 0.42
SF3B3-215ENST00000577085 GAS2L1Q99501 681 aaPredicted RBP17.69■□□□□ 0.42
SF3B3-215ENST00000577085 RNF26Q9BY78 433 aaPredicted RBP17.69■□□□□ 0.42
SF3B3-215ENST00000577085 UPF3BQ9BZI7 483 aaKnown RBP17.69■□□□□ 0.42
SF3B3-215ENST00000577085 TM6SF1Q9BZW5 370 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 RNPEPQ9H4A4 650 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 AZI2Q9H6S1 392 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 PDRG1Q9NUG6 133 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 SETD4Q9NVD3 440 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 SLC9A2Q9UBY0 812 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 PCDHA11Q9Y5I1 949 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 COL6A3P12111 3177 aa17.69■□□□□ 0.42
SF3B3-215ENST00000577085 ESYT2A0FGR8 921 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 RSPH10B2B2RC85 870 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 PPFIA3O75145 1194 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 RSPH10BP0C881 870 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 MARK3P27448 753 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 PHOSPHO2Q8TCD6 241 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 TNPO1Q92973 898 aaKnown RBP17.68■□□□□ 0.42
SF3B3-215ENST00000577085 VWCEQ96DN2 955 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 ZMYND12Q9H0C1 365 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 SMARCAD1Q9H4L7 1026 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 NCOA5Q9HCD5 579 aaKnown RBP17.68■□□□□ 0.42
SF3B3-215ENST00000577085 NRCAMQ92823 1304 aa17.68■□□□□ 0.42
SF3B3-215ENST00000577085 TREHO43280 583 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 IFNAR1P17181 557 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 CLK2P49760 499 aaKnown RBP17.67■□□□□ 0.42
SF3B3-215ENST00000577085 EVCP57679 992 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 SSRP1Q08945 709 aaKnown RBP17.67■□□□□ 0.42
SF3B3-215ENST00000577085 TOB2Q14106 344 aaPredicted RBP17.67■□□□□ 0.42
SF3B3-215ENST00000577085 IKBKEQ14164 716 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 HIC1Q14526 733 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 CYP2W1Q8TAV3 490 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 ZBED2Q9BTP6 218 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 TCEAL9Q9UHQ7 104 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 YBX2Q9Y2T7 364 aaKnown RBP17.67■□□□□ 0.42
SF3B3-215ENST00000577085 TELO2Q9Y4R8 837 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 SCN5AQ14524 2016 aa17.67■□□□□ 0.42
SF3B3-215ENST00000577085 ABHD14A-ACY1A0A1B0GW23 586 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 GSTTP1A0A1W2PQM5 241 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 NBNO60934 754 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 EFCAB14O75071 495 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 CAND2O75155 1236 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 NLRP5P59047 1200 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 PPFIA1Q13136 1202 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 STK3Q13188 491 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 PKN1Q16512 942 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 TRIM71Q2Q1W2 868 aaKnown RBP17.66■□□□□ 0.42
SF3B3-215ENST00000577085 HERC6Q8IVU3 1022 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 LMBR1Q8WVP7 490 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 WNT8BQ93098 351 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 ZNF274Q96GC6 653 aaPredicted RBP17.66■□□□□ 0.42
SF3B3-215ENST00000577085 LARP6Q9BRS8 491 aaKnown RBP17.66■□□□□ 0.42
SF3B3-215ENST00000577085 AGO4Q9HCK5 861 aaKnown RBP17.66■□□□□ 0.42
SF3B3-215ENST00000577085 DOCK5Q9H7D0 1870 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 NFASCO94856 1347 aa17.66■□□□□ 0.42
SF3B3-215ENST00000577085 MEIS1O00470 390 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 LGR5O75473 907 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 CXCL10P02778 98 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 CTSHP09668 335 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 ARP10275 920 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 MYOGP15173 224 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 HOXC8P31273 242 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 ACTR2P61160 394 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 NTRK3Q16288 839 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 NIPA1Q7RTP0 329 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 RSPH3Q86UC2 560 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 PLA2G4DQ86XP0 818 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 PRDM12Q9H4Q4 367 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 VPS54Q9P1Q0 977 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 TRPC6Q9Y210 931 aa17.65■□□□□ 0.42
SF3B3-215ENST00000577085 DDX39AO00148 427 aaKnown RBP17.64■□□□□ 0.41
SF3B3-215ENST00000577085 BACH1O14867 736 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 TLL1O43897 1013 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 CDKL5O76039 1030 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 CA3P07451 260 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 IGFBP4P22692 258 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 WDR5P61964 334 aaKnown RBP17.64■□□□□ 0.41
SF3B3-215ENST00000577085 IGBP1P78318 339 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 SETQ01105 290 aaPredicted RBP17.64■□□□□ 0.41
SF3B3-215ENST00000577085 GRIK4Q16099 956 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 TAF2Q6P1X5 1199 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 SH3GLB2Q9NR46 395 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 TUBE1Q9UJT0 475 aa17.64■□□□□ 0.41
SF3B3-215ENST00000577085 TRIP12Q14669 1992 aaPredicted RBP17.64■□□□□ 0.41
SF3B3-215ENST00000577085 IPO5O00410 1097 aaKnown RBP17.63■□□□□ 0.41
SF3B3-215ENST00000577085 DEXIO95424 95 aa17.63■□□□□ 0.41
SF3B3-215ENST00000577085 STAT5BP51692 787 aa17.63■□□□□ 0.41
SF3B3-215ENST00000577085 GPNMBQ14956 572 aa17.63■□□□□ 0.41
SF3B3-215ENST00000577085 SEPT8Q92599 483 aa17.63■□□□□ 0.41
SF3B3-215ENST00000577085 ZNF577Q9BSK1 485 aa17.63■□□□□ 0.41
SF3B3-215ENST00000577085 RRN3P2A6NIE6 340 aa17.62■□□□□ 0.41
SF3B3-215ENST00000577085 FAM86B1E9PN63 330 aa17.62■□□□□ 0.41
SF3B3-215ENST00000577085 AMHP03971 560 aa17.62■□□□□ 0.41
SF3B3-215ENST00000577085 CYP3A4P08684 503 aa17.62■□□□□ 0.41
SF3B3-215ENST00000577085 FAM86B2P0C5J1 330 aa17.62■□□□□ 0.41
SF3B3-215ENST00000577085 ANAPC15P60006 121 aa17.62■□□□□ 0.41
SF3B3-215ENST00000577085 ITGB3BPQ13352 177 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms