RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 ATP6V0A1Q93050 837 aa17.33■□□□□ 0.36
SMG6-220ENST00000576218 UIMC1Q96RL1 719 aa17.33■□□□□ 0.36
SMG6-220ENST00000576218 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.33■□□□□ 0.36
SMG6-220ENST00000576218 FTOQ9C0B1 505 aaKnown RBP eCLIP17.33■□□□□ 0.36
SMG6-220ENST00000576218 SMARCAD1Q9H4L7 1026 aa17.33■□□□□ 0.36
SMG6-220ENST00000576218 ERAP1Q9NZ08 941 aa17.33■□□□□ 0.36
SMG6-220ENST00000576218 KCNJ14Q9UNX9 436 aa17.33■□□□□ 0.36
SMG6-220ENST00000576218 LIMCH1Q9UPQ0 1083 aa17.33■□□□□ 0.36
SMG6-220ENST00000576218 FAM86B1E9PN63 330 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 IPO5O00410 1097 aaKnown RBP17.32■□□□□ 0.36
SMG6-220ENST00000576218 ADAMTS3O15072 1205 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 DTNBO60941 627 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 FAM86B2P0C5J1 330 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 FOSBP53539 338 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 ACTR2P61160 394 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 PTK7Q13308 1070 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 NONOQ15233 471 aaKnown RBP eCLIP17.32■□□□□ 0.36
SMG6-220ENST00000576218 ZNF365Q70YC5 407 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 KRT25Q7Z3Z0 450 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 TBCKQ8TEA7 893 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 AFAP1L1Q8TED9 768 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 TRPC6Q9Y210 931 aa17.32■□□□□ 0.36
SMG6-220ENST00000576218 ST18O60284 1047 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 PFKMP08237 780 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 ACTN1P12814 892 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 RFC2P35250 354 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 ZNF200P98182 395 aaPredicted RBP17.31■□□□□ 0.36
SMG6-220ENST00000576218 FAM160B1Q5W0V3 765 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 OTOP2Q7RTS6 562 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 DAGLBQ8NCG7 672 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 TNPO1Q92973 898 aaKnown RBP17.31■□□□□ 0.36
SMG6-220ENST00000576218 TBC1D22BQ9NU19 505 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 SETD4Q9NVD3 440 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 TELO2Q9Y4R8 837 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 SAMM50Q9Y512 469 aa17.31■□□□□ 0.36
SMG6-220ENST00000576218 GSTTP1A0A1W2PQM5 241 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 CTDNEP1O95476 244 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 SELPP16109 830 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 THPOP40225 353 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 USP11P51784 963 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 PPFIA1Q13136 1202 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 ITGB3BPQ13352 177 aaPredicted RBP17.3■□□□□ 0.36
SMG6-220ENST00000576218 RABEP1Q15276 862 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 TMEM240Q5SV17 173 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 MIS18BP1Q6P0N0 1132 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 LRRC8DQ7L1W4 858 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 CCDC83Q8IWF9 413 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 ZSCAN31Q96LW9 406 aaPredicted RBP17.3■□□□□ 0.36
SMG6-220ENST00000576218 PHF20Q9BVI0 1012 aa17.3■□□□□ 0.36
SMG6-220ENST00000576218 EMSYQ7Z589 1322 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 NRCAMQ92823 1304 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 IGLV3-22A0A075B6J6 115 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 IQCF3P0C7M6 154 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 KRT2P35908 639 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 RBM25P49756 843 aaKnown RBP17.29■□□□□ 0.36
SMG6-220ENST00000576218 STAT5BP51692 787 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 IGBP1P78318 339 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 INF2Q27J81 1249 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 NSUN7Q8NE18 718 aaKnown RBP17.29■□□□□ 0.36
SMG6-220ENST00000576218 CRYGNQ8WXF5 182 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 RNPEPQ9H4A4 650 aa17.29■□□□□ 0.36
SMG6-220ENST00000576218 TREHO43280 583 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 MARCH6O60337 910 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 JAK2O60674 1132 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 GAS7O60861 476 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 PARNO95453 639 aaKnown RBP17.28■□□□□ 0.36
SMG6-220ENST00000576218 CKBP12277 381 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 CIITAP33076 1130 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 KRT76Q01546 638 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 LETM2Q2VYF4 491 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 ZNF697Q5TEC3 545 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 PIK3AP1Q6ZUJ8 805 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 C16orf59Q7L2K0 433 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 SERINC5Q86VE9 423 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 CKAP2LQ8IYA6 745 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 FAM184AQ8NB25 1140 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 LMBR1Q8WVP7 490 aa17.28■□□□□ 0.36
SMG6-220ENST00000576218 DHX38Q92620 1227 aaKnown RBP17.28■□□□□ 0.36
SMG6-220ENST00000576218 SH2B1Q9NRF2 756 aaPredicted RBP17.28■□□□□ 0.36
SMG6-220ENST00000576218 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.27■□□□□ 0.36
SMG6-220ENST00000576218 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.27■□□□□ 0.36
SMG6-220ENST00000576218 CHMP2AO43633 222 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 SLC34A2O95436 690 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 CTSHP09668 335 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 SMAD3P84022 425 aaKnown RBP17.27■□□□□ 0.36
SMG6-220ENST00000576218 SAFBQ15424 915 aaKnown RBP eCLIP17.27■□□□□ 0.36
SMG6-220ENST00000576218 GRIK4Q16099 956 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 LRCH2Q5VUJ6 765 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 ZNF746Q6NUN9 644 aaPredicted RBP17.27■□□□□ 0.36
SMG6-220ENST00000576218 GPR153Q6NV75 609 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 RSPH3Q86UC2 560 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 DEFB123Q8N688 67 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 HERVK_113Q902F9 699 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 TEKT3Q9BXF9 490 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 ZNF302Q9NR11 478 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 GJB4Q9NTQ9 266 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 TUBE1Q9UJT0 475 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 SLC4A7Q9Y6M7 1214 aa17.27■□□□□ 0.36
SMG6-220ENST00000576218 RSPH10B2B2RC85 870 aa17.26■□□□□ 0.35
SMG6-220ENST00000576218 MSH4O15457 936 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms