RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TDRD12Q587J7 1177 aaKnown RBP25.13■■□□□ 1.61
VPS53-211ENST00000571805 HDAC7Q8WUI4 952 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 CRACR2AQ9BSW2 395 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 SELENOOQ9BVL4 669 aa25.13■■□□□ 1.61
VPS53-211ENST00000571805 POTEFA5A3E0 1075 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 NCK2O43639 380 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 POTEIP0CG38 1075 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 TCP10Q12799 353 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 ADAM9Q13443 819 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 POTEGQ6S5H5 508 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 POTEEQ6S8J3 1075 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 CATSPER3Q86XQ3 398 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 GOLGA5Q8TBA6 731 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 AENQ8WTP8 325 aaKnown RBP25.12■■□□□ 1.61
VPS53-211ENST00000571805 GDAP1L1Q96MZ0 367 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 NOX5Q96PH1 765 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 FAM184BQ9ULE4 1060 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 PRPF6O94906 941 aaKnown RBP25.12■■□□□ 1.61
VPS53-211ENST00000571805 CXCR5P32302 372 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 ACTN2P35609 894 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 ARHGAP4P98171 946 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 EDRF1Q3B7T1 1238 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 SH3BP5LQ7L8J4 393 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 FAM198AQ9UFP1 575 aa25.12■■□□□ 1.61
VPS53-211ENST00000571805 DMGDHQ9UI17 866 aaKnown RBP25.12■■□□□ 1.61
VPS53-211ENST00000571805 CCDC70Q6NSX1 233 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 RUBCNQ92622 972 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 PI4KBQ9UBF8 816 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 G3V3G9 751 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 BUB1O43683 1085 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 RNF40O75150 1001 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 ALDH1B1P30837 517 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 PSMC6P62333 389 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 DCAF8Q5TAQ9 597 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 TATDN1Q6P1N9 297 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 PPP4R3CPQ6ZMV5 832 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 LENG9Q96B70 501 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 PSMB7Q99436 277 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 MRIQ9BWK5 157 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 SMARCAL1Q9NZC9 954 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 EHD2Q9NZN4 543 aa25.11■■□□□ 1.61
VPS53-211ENST00000571805 CASP5P51878 434 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 GIT2Q14161 759 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 Q4G0T1 1027 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 IDI2Q9BXS1 227 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 FAM204AQ9H8W3 233 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 KRT18P05783 430 aaKnown RBP25.1■■□□□ 1.61
VPS53-211ENST00000571805 SPATA31C1P0DKV0 1188 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 CAPN2P17655 700 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 PRR16Q569H4 304 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 HAUS3Q68CZ6 603 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 HINFPQ9BQA5 517 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 GANQ9H2C0 597 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 DBNDD1Q9H9R9 158 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 AIPL1Q9NZN9 384 aa25.1■■□□□ 1.61
VPS53-211ENST00000571805 AGPSO00116 658 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 TBX3O15119 743 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 PODNQ7Z5L7 613 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 TRPC5Q9UL62 973 aaPredicted RBP25.09■■□□□ 1.61
VPS53-211ENST00000571805 CETN3O15182 167 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 RPA1P27694 616 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 SNAP25P60880 206 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 KCNH2Q12809 1159 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 NAB2Q15742 525 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 DPY19L2P1Q6NXN4 242 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 KIAA0825Q8IV33 1275 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 TBC1D5Q92609 795 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 AMNQ9BXJ7 453 aa25.09■■□□□ 1.61
VPS53-211ENST00000571805 COL11A2P13942 1736 aaPredicted RBP25.08■■□□□ 1.61
VPS53-211ENST00000571805 F5H6K3 240 aa25.08■■□□□ 1.61
VPS53-211ENST00000571805 TRIM37O94972 964 aa25.08■■□□□ 1.61
VPS53-211ENST00000571805 KLRC3Q07444 240 aa25.08■■□□□ 1.61
VPS53-211ENST00000571805 SLC18A3Q16572 532 aa25.08■■□□□ 1.61
VPS53-211ENST00000571805 SYT2Q8N9I0 419 aaPredicted RBP25.08■■□□□ 1.61
VPS53-211ENST00000571805 ZHX3Q9H4I2 956 aa25.08■■□□□ 1.61
VPS53-211ENST00000571805 TRAF3IP3Q9Y228 551 aa25.08■■□□□ 1.61
VPS53-211ENST00000571805 HOXD13P35453 343 aa25.08■■□□□ 1.6
VPS53-211ENST00000571805 GGCXP38435 758 aa25.08■■□□□ 1.6
VPS53-211ENST00000571805 CCDC181Q5TID7 509 aa25.08■■□□□ 1.6
VPS53-211ENST00000571805 MCTP2Q6DN12 878 aa25.08■■□□□ 1.6
VPS53-211ENST00000571805 EPM2AIP1Q7L775 607 aaPredicted RBP25.08■■□□□ 1.6
VPS53-211ENST00000571805 RIN2Q8WYP3 895 aaPredicted RBP25.08■■□□□ 1.6
VPS53-211ENST00000571805 TSKSQ9UJT2 592 aa25.08■■□□□ 1.6
VPS53-211ENST00000571805 FAM86B1E9PN63 330 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 MEIS1O00470 390 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 FAM86B2P0C5J1 330 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 NR2F2P24468 414 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 MATR3P43243 847 aaKnown RBP eCLIP25.07■■□□□ 1.69e-10■■□□□ 13.9
VPS53-211ENST00000571805 MMP14P50281 582 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 ICA1Q05084 483 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 DNM3Q9UQ16 869 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 A0A087X0T9 212 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 RPS6KA5O75582 802 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 FAM228BP0C875 321 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 PAFAH1B1P43034 410 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 PABPC4Q13310 644 aaKnown RBP eCLIP25.07■■□□□ 1.6
VPS53-211ENST00000571805 RAPGEF1Q13905 1077 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 NLGN1Q8N2Q7 840 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 GMCL1P1Q8NEA9 526 aa25.07■■□□□ 1.6
VPS53-211ENST00000571805 KLRC1P26715 233 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms