RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 FAM43BQ6ZT52 329 aaPredicted RBP11.14□□□□□ -0.63
CIITA-207ENST00000571545 FBXL16Q8N461 479 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 SEPT8Q92599 483 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 RAD9AQ99638 391 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 COL25A1Q9BXS0 654 aaPredicted RBP11.14□□□□□ -0.63
CIITA-207ENST00000571545 RNPEPQ9H4A4 650 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 SMARCAD1Q9H4L7 1026 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 AZI2Q9H6S1 392 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 JPH1Q9HDC5 661 aaPredicted RBP11.14□□□□□ -0.63
CIITA-207ENST00000571545 JADE2Q9NQC1 790 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 BARHL2Q9NY43 387 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 NID2Q14112 1375 aa11.14□□□□□ -0.63
CIITA-207ENST00000571545 PTPRSQ13332 1948 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 NFASCO94856 1347 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 ESYT2A0FGR8 921 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 GJB5O95377 273 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 MYOGP15173 224 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 ITGB5P18084 799 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 HSPA4P34932 840 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 SLC26A2P50443 739 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 ARHGAP4P98171 946 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 AKAP17AQ02040 695 aaKnown RBP11.13□□□□□ -0.63
CIITA-207ENST00000571545 SP4Q02446 784 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 UBE2SQ16763 222 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 UTP14CQ5TAP6 766 aaKnown RBP11.13□□□□□ -0.63
CIITA-207ENST00000571545 RPAINQ86UA6 219 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 RAB11FIP4Q86YS3 637 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 BICD2Q8TD16 824 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 GLG1Q92896 1179 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 KCNB2Q92953 911 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 ZFP91Q96JP5 570 aaPredicted RBP11.13□□□□□ -0.63
CIITA-207ENST00000571545 ANO3Q9BYT9 981 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 SLC9A2Q9UBY0 812 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 TCEAL9Q9UHQ7 104 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 NAP1L2Q9ULW6 460 aaPredicted RBP11.13□□□□□ -0.63
CIITA-207ENST00000571545 INSL6Q9Y581 213 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 SIP14410 1827 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 COL4A6Q14031 1691 aa11.13□□□□□ -0.63
CIITA-207ENST00000571545 hCG_1642624A0A1W2PR95 340 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 SMCO2A6NFE2 343 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 RRN3P2A6NIE6 340 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 M0QZ92 97 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 STXBP3O00186 592 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 TREHO43280 583 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 SCG2P13521 617 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 GNA11P29992 359 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 SREBF1P36956 1147 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 MRPS5P82675 430 aaKnown RBP11.12□□□□□ -0.63
CIITA-207ENST00000571545 ZNF200P98182 395 aaPredicted RBP11.12□□□□□ -0.63
CIITA-207ENST00000571545 SETQ01105 290 aaPredicted RBP11.12□□□□□ -0.63
CIITA-207ENST00000571545 TAP1Q03518 808 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 PPFIA1Q13136 1202 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 ADGRE1Q14246 886 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 GPNMBQ14956 572 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 PFKFB3Q16875 520 aaPredicted RBP11.12□□□□□ -0.63
CIITA-207ENST00000571545 ADCK5Q3MIX3 580 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 CEP55Q53EZ4 464 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 PLEKHG4Q58EX7 1191 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 TRAF7Q6Q0C0 670 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 NIPA1Q7RTP0 329 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 TRIM50Q86XT4 487 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 RASEFQ8IZ41 740 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 CCDC148Q8NFR7 591 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 LMBR1Q8WVP7 490 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 JAKMIP1Q96N16 626 aaKnown RBP11.12□□□□□ -0.63
CIITA-207ENST00000571545 SAMD11Q96NU1 681 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 TGS1Q96RS0 853 aaKnown RBP11.12□□□□□ -0.63
CIITA-207ENST00000571545 MXRA8Q9BRK3 442 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 SETD4Q9NVD3 440 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 LMCD1Q9NZU5 365 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 TUBE1Q9UJT0 475 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 BRPF3Q9ULD4 1205 aa11.12□□□□□ -0.63
CIITA-207ENST00000571545 V9GY48 417 aaPredicted RBP11.12□□□□□ -0.63
CIITA-207ENST00000571545 COL4A4P53420 1690 aaPredicted RBP11.11□□□□□ -0.63
CIITA-207ENST00000571545 ZNF76P36508 570 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 ADAM17P78536 824 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 DEFB103AP81534 67 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 FUT2Q10981 343 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 GRIK4Q16099 956 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 FAM26DQ5JW98 314 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 MYOCDQ8IZQ8 938 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 USP38Q8NB14 1042 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 DBF4BQ8NFT6 615 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 PPM1EQ8WY54 764 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 ARNTL2Q8WYA1 636 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 BRF1Q92994 677 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 WNT8BQ93098 351 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 TCEANC2Q96MN5 208 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 IFIH1Q9BYX4 1025 aaKnown RBP11.11□□□□□ -0.63
CIITA-207ENST00000571545 C6orf50Q9HD87 102 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 KCNH7Q9NS40 1196 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 COG5Q9UP83 839 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 CHD9Q3L8U1 2897 aa11.11□□□□□ -0.63
CIITA-207ENST00000571545 CDH23Q9H251 3354 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 MBLAC1A4D2B0 266 aaPredicted RBP11.1□□□□□ -0.63
CIITA-207ENST00000571545 EIF5BO60841 1220 aaKnown RBP11.1□□□□□ -0.63
CIITA-207ENST00000571545 ATP9AO75110 1047 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 CTSHP09668 335 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 RPS6KB1P23443 525 aa11.1□□□□□ -0.63
CIITA-207ENST00000571545 CLK2P49760 499 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms