RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 SYNRGQ9UMZ2 1314 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 IGLV3-22A0A075B6J6 115 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.33■■□□□ 1.33
VPS53-210ENST00000571456 KPNA6O60684 536 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 ADAMTS4O75173 837 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 FOSBP53539 338 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 FAAP100Q0VG06 881 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 PLA2G4DQ86XP0 818 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 DHX37Q8IY37 1157 aaKnown RBP23.33■■□□□ 1.33
VPS53-210ENST00000571456 TOX2Q96NM4 488 aa23.33■■□□□ 1.33
VPS53-210ENST00000571456 NFASCO94856 1347 aa23.33■■□□□ 1.32
VPS53-210ENST00000571456 GBF1Q92538 1859 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 TRANK1O15050 2925 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 A0A1W2PQ45 241 aaPredicted RBP23.32■■□□□ 1.32
VPS53-210ENST00000571456 A0A1W2PQY0 241 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 MOXD2PA6NHM9 499 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 DCDC2CA8MYV0 355 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 FAM86B1E9PN63 330 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 ARIH2O95376 493 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 TIMP1P01033 207 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 FAM86B2P0C5J1 330 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 UBA1P22314 1058 aaKnown RBP23.32■■□□□ 1.32
VPS53-210ENST00000571456 CELF3Q5SZQ8 465 aaKnown RBP23.32■■□□□ 1.32
VPS53-210ENST00000571456 METTL7BQ6UX53 244 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 ANKRD33Q7Z3H0 272 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 BRAPQ7Z569 592 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 OR6J1Q8NGC5 347 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 TBC1D22BQ9NU19 505 aa23.32■■□□□ 1.32
VPS53-210ENST00000571456 A6NJR5 290 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 TBX3O15119 743 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 DYNC1LI2O43237 492 aaPredicted RBP23.31■■□□□ 1.32
VPS53-210ENST00000571456 ADCY6O43306 1168 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 C6orf222P0C671 652 aaPredicted RBP23.31■■□□□ 1.32
VPS53-210ENST00000571456 SYT1P21579 422 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 ANP32AP39687 249 aaKnown RBP23.31■■□□□ 1.32
VPS53-210ENST00000571456 LY6KQ17RY6 165 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 LETM2Q2VYF4 491 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 RASIP1Q5U651 963 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 MYSM1Q5VVJ2 828 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 KLHDC9Q8NEP7 349 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 SDF4Q9BRK5 362 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 MLXIPQ9HAP2 919 aa23.31■■□□□ 1.32
VPS53-210ENST00000571456 CABYRO75952 493 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 GGPS1O95749 300 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 PGK1P00558 417 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 KCNA2P16389 499 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 ARHGAP1Q07960 439 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 SEMA3FQ13275 785 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 PPIGQ13427 754 aaKnown RBP eCLIP23.3■■□□□ 1.321e-7■■□□□ 13.2
VPS53-210ENST00000571456 FSCN1Q16658 493 aaKnown RBP23.3■■□□□ 1.32
VPS53-210ENST00000571456 AAK1Q2M2I8 961 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 PRR16Q569H4 304 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 RILPL1Q5EBL4 403 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 TMEM240Q5SV17 173 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 MCTP1Q6DN14 999 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 MFSD5Q6N075 450 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 C16orf59Q7L2K0 433 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 PPTC7Q8NI37 304 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 SEZ6LQ9BYH1 1024 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 AGO4Q9HCK5 861 aaKnown RBP23.3■■□□□ 1.32
VPS53-210ENST00000571456 POLR3EQ9NVU0 708 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 TCEAL9Q9UHQ7 104 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 MSRAQ9UJ68 235 aa23.3■■□□□ 1.32
VPS53-210ENST00000571456 IPO5O00410 1097 aaKnown RBP23.29■■□□□ 1.32
VPS53-210ENST00000571456 STX6O43752 255 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 RAB30Q15771 203 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 GNASQ5JWF2 1037 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 CYP2W1Q8TAV3 490 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 FAM20AQ96MK3 541 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 RIT2Q99578 217 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 ZNF577Q9BSK1 485 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 EPHX3Q9H6B9 360 aa23.29■■□□□ 1.32
VPS53-210ENST00000571456 DDX25Q9UHL0 483 aaKnown RBP23.29■■□□□ 1.32
VPS53-210ENST00000571456 VPS37CA5D8V6 355 aaPredicted RBP23.28■■□□□ 1.32
VPS53-210ENST00000571456 CCNT1O60563 726 aaKnown RBP23.28■■□□□ 1.32
VPS53-210ENST00000571456 PPFIA4O75335 1185 aa23.28■■□□□ 1.32
VPS53-210ENST00000571456 TMEM31Q5JXX7 168 aa23.28■■□□□ 1.32
VPS53-210ENST00000571456 LENG9Q96B70 501 aa23.28■■□□□ 1.32
VPS53-210ENST00000571456 ZFP91Q96JP5 570 aaPredicted RBP23.28■■□□□ 1.32
VPS53-210ENST00000571456 ZSCAN16Q9H4T2 348 aaPredicted RBP23.28■■□□□ 1.32
VPS53-210ENST00000571456 TBX21Q9UL17 535 aa23.28■■□□□ 1.32
VPS53-210ENST00000571456 PRRC2BQ5JSZ5 2229 aaKnown RBP23.28■■□□□ 1.32
VPS53-210ENST00000571456 NOP56O00567 594 aaKnown RBP23.27■■□□□ 1.32
VPS53-210ENST00000571456 EDIL3O43854 480 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 BAG4O95429 457 aaKnown RBP23.27■■□□□ 1.32
VPS53-210ENST00000571456 ARP10275 920 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 HOXD8P13378 290 aaPredicted RBP23.27■■□□□ 1.32
VPS53-210ENST00000571456 SP2Q02086 613 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 TFF2Q03403 129 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 DGKDQ16760 1214 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 EARS2Q5JPH6 523 aaKnown RBP23.27■■□□□ 1.32
VPS53-210ENST00000571456 CCSAPQ6IQ19 270 aaPredicted RBP23.27■■□□□ 1.32
VPS53-210ENST00000571456 SLFN12Q8IYM2 578 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 LENG1Q96BZ8 264 aaPredicted RBP23.27■■□□□ 1.32
VPS53-210ENST00000571456 SPATA33Q96N06 139 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 JPH1Q9HDC5 661 aaPredicted RBP23.27■■□□□ 1.32
VPS53-210ENST00000571456 FOXD4L1Q9NU39 408 aa23.27■■□□□ 1.32
VPS53-210ENST00000571456 KIF28PB7ZC32 967 aa23.26■■□□□ 1.31
VPS53-210ENST00000571456 CTAGE5O15320 804 aa23.26■■□□□ 1.31
VPS53-210ENST00000571456 TDP2O95551 362 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms