RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TMEM47Q9BQJ4 181 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 CNTNAP3Q9BZ76 1288 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 ECHDC1Q9NTX5 307 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 NR2E1Q9Y466 385 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 PCDHGC5Q9Y5F6 944 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 SPTBN2O15020 2390 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 KAT6AQ92794 2004 aa21.16■□□□□ 0.98
CLK3-227ENST00000570296 OTOGLQ3ZCN5 2332 aa21.15■□□□□ 0.98
CLK3-227ENST00000570296 ABCB11O95342 1321 aa21.15■□□□□ 0.98
CLK3-227ENST00000570296 BRD1O95696 1058 aa21.15■□□□□ 0.98
CLK3-227ENST00000570296 NR3C2P08235 984 aa21.15■□□□□ 0.98
CLK3-227ENST00000570296 SRGAP2BP0DMP2 458 aa21.15■□□□□ 0.98
CLK3-227ENST00000570296 EIF2AK2P19525 551 aaKnown RBP21.15■□□□□ 0.98
CLK3-227ENST00000570296 MCF2L2Q86YR7 1114 aa21.15■□□□□ 0.98
CLK3-227ENST00000570296 CHD8Q9HCK8 2581 aa21.15■□□□□ 0.98
CLK3-227ENST00000570296 ORC4O43929 436 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 GGPS1O95749 300 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 SIRT2Q8IXJ6 389 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 VN1R2Q8NFZ6 395 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 S1PR5Q9H228 398 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 SEMA4AQ9H3S1 761 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 EHMT1Q9H9B1 1298 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 MAP1BP46821 2468 aaKnown RBP21.14■□□□□ 0.97
CLK3-227ENST00000570296 MYH6P13533 1939 aa21.14■□□□□ 0.97
CLK3-227ENST00000570296 GHRP10912 638 aa21.13■□□□□ 0.97
CLK3-227ENST00000570296 UBE3AQ05086 875 aa21.13■□□□□ 0.97
CLK3-227ENST00000570296 CTDSPL2Q05D32 466 aa21.13■□□□□ 0.97
CLK3-227ENST00000570296 DUSP6Q16828 381 aa21.13■□□□□ 0.97
CLK3-227ENST00000570296 TMEM184AQ6ZMB5 413 aa21.13■□□□□ 0.97
CLK3-227ENST00000570296 MFSD1Q9H3U5 465 aa21.13■□□□□ 0.97
CLK3-227ENST00000570296 PXMP2Q9NR77 195 aa21.13■□□□□ 0.97
CLK3-227ENST00000570296 CCDC171Q6TFL3 1326 aa21.12■□□□□ 0.97
CLK3-227ENST00000570296 PER2O15055 1255 aa21.12■□□□□ 0.97
CLK3-227ENST00000570296 CHRNA1P02708 482 aa21.12■□□□□ 0.97
CLK3-227ENST00000570296 LGALS2P05162 132 aa21.12■□□□□ 0.97
CLK3-227ENST00000570296 SNHG28P0DPA3 235 aa21.12■□□□□ 0.97
CLK3-227ENST00000570296 RBM10P98175 930 aaKnown RBP21.12■□□□□ 0.97
CLK3-227ENST00000570296 SETD4Q9NVD3 440 aa21.12■□□□□ 0.97
CLK3-227ENST00000570296 TGFB3P10600 412 aa21.11■□□□□ 0.97
CLK3-227ENST00000570296 UBA1P22314 1058 aaKnown RBP21.11■□□□□ 0.97
CLK3-227ENST00000570296 LPIN1Q14693 890 aa21.11■□□□□ 0.97
CLK3-227ENST00000570296 CRIPAKQ8N1N5 446 aa21.11■□□□□ 0.97
CLK3-227ENST00000570296 MICAL1Q8TDZ2 1067 aa21.11■□□□□ 0.97
CLK3-227ENST00000570296 TCP11L1Q9NUJ3 509 aa21.11■□□□□ 0.97
CLK3-227ENST00000570296 ANAPC4Q9UJX5 808 aa21.11■□□□□ 0.97
CLK3-227ENST00000570296 CFAP47Q6ZTR5 3102 aa21.11■□□□□ 0.97
CLK3-227ENST00000570296 SORBS3O60504 671 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 LMNAP02545 664 aaKnown RBP21.1■□□□□ 0.97
CLK3-227ENST00000570296 FGRP09769 529 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 HSPD1P10809 573 aaKnown RBP21.1■□□□□ 0.97
CLK3-227ENST00000570296 SP100P23497 879 aaPredicted RBP21.1■□□□□ 0.97
CLK3-227ENST00000570296 ADAM17P78536 824 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 GPATCH4Q5T3I0 446 aaKnown RBP21.1■□□□□ 0.97
CLK3-227ENST00000570296 ANKRD54Q6NXT1 300 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 NPAS4Q8IUM7 802 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 USP26Q9BXU7 913 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 LRRCC1Q9C099 1032 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 MLXIPQ9HAP2 919 aa21.1■□□□□ 0.97
CLK3-227ENST00000570296 HOXB8P17481 243 aaPredicted RBP21.09■□□□□ 0.97
CLK3-227ENST00000570296 SP2Q02086 613 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 KCNC3Q14003 757 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 CDC37Q16543 378 aaPredicted RBP21.09■□□□□ 0.97
CLK3-227ENST00000570296 PDE12Q6L8Q7 609 aaKnown RBP21.09■□□□□ 0.97
CLK3-227ENST00000570296 SYCE2Q6PIF2 218 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 CCDC105Q8IYK2 499 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 KIAA2013Q8IYS2 634 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 KCNG4Q8TDN1 519 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 SEC62Q99442 399 aaKnown RBP21.09■□□□□ 0.97
CLK3-227ENST00000570296 TSHZ2Q9NRE2 1034 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 DLL3Q9NYJ7 618 aa21.09■□□□□ 0.97
CLK3-227ENST00000570296 TECP42680 631 aa21.08■□□□□ 0.97
CLK3-227ENST00000570296 MGAT3Q09327 533 aa21.08■□□□□ 0.97
CLK3-227ENST00000570296 ANGPT1Q15389 498 aa21.08■□□□□ 0.97
CLK3-227ENST00000570296 RASGRP4Q8TDF6 673 aa21.08■□□□□ 0.97
CLK3-227ENST00000570296 LMBR1Q8WVP7 490 aa21.08■□□□□ 0.97
CLK3-227ENST00000570296 MRPL11Q9Y3B7 192 aaKnown RBP21.08■□□□□ 0.97
CLK3-227ENST00000570296 ATRXP46100 2492 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 STAG3L1P0CL83 205 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 ARHGAP4P98171 946 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 PAN2Q504Q3 1202 aaKnown RBP21.07■□□□□ 0.96
CLK3-227ENST00000570296 FBXO47Q5MNV8 452 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 TAF2Q6P1X5 1199 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 TSHZ1Q6ZSZ6 1077 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 PANK1Q8TE04 598 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 LINC01599Q8WXQ3 324 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 GPATCH3Q96I76 525 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 TTC14Q96N46 770 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 NECTIN4Q96NY8 510 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 PDCD2LQ9BRP1 358 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 ZNF215Q9UL58 517 aaPredicted RBP21.07■□□□□ 0.96
CLK3-227ENST00000570296 PCDHB12Q9Y5F1 795 aa21.07■□□□□ 0.96
CLK3-227ENST00000570296 USP24Q9UPU5 2620 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 C2CD4DB7Z1M9 353 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 NOP56O00567 594 aaKnown RBP21.06■□□□□ 0.96
CLK3-227ENST00000570296 FOXP2O15409 715 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 PPFIA3O75145 1194 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 MYCLP12524 364 aaPredicted RBP21.06■□□□□ 0.96
CLK3-227ENST00000570296 AOC1P19801 751 aa21.06■□□□□ 0.96
CLK3-227ENST00000570296 CWF19L1Q69YN2 538 aaKnown RBP21.06■□□□□ 0.96
CLK3-227ENST00000570296 RSPH3Q86UC2 560 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms