RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 FBXO2Q9UK22 296 aaPredicted RBP9.55□□□□□ -0.88
SF3B3-212ENST00000568539 VAV3Q9UKW4 847 aa9.55□□□□□ -0.88
SF3B3-212ENST00000568539 LRRC37A2A6NM11 1700 aa9.55□□□□□ -0.88
SF3B3-212ENST00000568539 NFASCO94856 1347 aa9.55□□□□□ -0.88
SF3B3-212ENST00000568539 MARCH6O60337 910 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 GAS7O60861 476 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 ZMYND10O75800 440 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 INHAP05111 366 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 AKR1A1P14550 325 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 SMPD1P17405 629 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 TNFAIP2Q03169 654 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 SPIRE1Q08AE8 756 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 NEDD9Q14511 834 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 PKN2Q16513 984 aaKnown RBP9.54□□□□□ -0.88
SF3B3-212ENST00000568539 DUSP28Q4G0W2 176 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 FBXO46Q6PJ61 603 aaPredicted RBP9.54□□□□□ -0.88
SF3B3-212ENST00000568539 B3GNT9Q6UX72 402 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 DTHD1Q6ZMT9 781 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 KRI1Q8N9T8 703 aaKnown RBP9.54□□□□□ -0.88
SF3B3-212ENST00000568539 GIMAP8Q8ND71 665 aaPredicted RBP9.54□□□□□ -0.88
SF3B3-212ENST00000568539 TMC2Q8TDI7 906 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 SH3TC2Q8TF17 1288 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 COPS5Q92905 334 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 FERMT2Q96AC1 680 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 TEKT3Q9BXF9 490 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 GDPD2Q9HCC8 539 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 FAM184BQ9ULE4 1060 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 PCDHA12Q9UN75 941 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 GNEQ9Y223 722 aaKnown RBP9.54□□□□□ -0.88
SF3B3-212ENST00000568539 SRPRBQ9Y5M8 271 aaKnown RBP9.54□□□□□ -0.88
SF3B3-212ENST00000568539 ELP1O95163 1332 aa9.54□□□□□ -0.88
SF3B3-212ENST00000568539 POTEFA5A3E0 1075 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 VWA3AA6NCI4 1184 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 C2orf72A6NCS6 295 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 DPYSL4O14531 572 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 NKRFO15226 690 aaKnown RBP eCLIP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 SEPT4O43236 478 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 FARP2O94887 1054 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 GGPS1O95749 300 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 CCNE2O96020 404 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 PTGS1P23219 599 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 CCND3P30281 292 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 MLLT3P42568 568 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 TECP42680 631 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 ME1P48163 572 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 GRIN1Q05586 938 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 ARHGAP1Q07960 439 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 PPP2R5CQ13362 524 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 SLC9C1Q4G0N8 1177 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 CELF3Q5SZQ8 465 aaKnown RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 AXDND1Q5T1B0 1012 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 GJC2Q5T442 439 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 METTL7BQ6UX53 244 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 CYFIP1Q7L576 1253 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 DHX37Q8IY37 1157 aaKnown RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 IGSF22Q8N9C0 903 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 TMEM87AQ8NBN3 555 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 EMID1Q96A84 441 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 GBP4Q96PP9 640 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 SDF4Q9BRK5 362 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 UNC45AQ9H3U1 944 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 JPH1Q9HDC5 661 aaPredicted RBP9.53□□□□□ -0.88
SF3B3-212ENST00000568539 SLC9A2Q9UBY0 812 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 PCDHA7Q9UN72 937 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 TELO2Q9Y4R8 837 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 MGAMO43451 1857 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 HTTP42858 3142 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 BRCA2P51587 3418 aa9.53□□□□□ -0.88
SF3B3-212ENST00000568539 POTEMA6NI47 508 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 DDX39AO00148 427 aaKnown RBP9.52□□□□□ -0.89
SF3B3-212ENST00000568539 SORBS3O60504 671 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 CUTAO60888 179 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 DUSP11O75319 330 aaKnown RBP9.52□□□□□ -0.89
SF3B3-212ENST00000568539 GH1P01241 217 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 CNGA1P29973 690 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 LONP1P36776 959 aaKnown RBP9.52□□□□□ -0.89
SF3B3-212ENST00000568539 ACTR2P61160 394 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 KRT76Q01546 638 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 LAMC2Q13753 1193 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 PDIA5Q14554 519 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 CSPP1Q1MSJ5 1256 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 TMEM266Q2M3C6 531 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 ZNF746Q6NUN9 644 aaPredicted RBP9.52□□□□□ -0.89
SF3B3-212ENST00000568539 LENG1Q96BZ8 264 aaPredicted RBP9.52□□□□□ -0.89
SF3B3-212ENST00000568539 CLIC6Q96NY7 704 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 CSRNP2Q9H175 543 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 MLXIPQ9HAP2 919 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 Q9Y3F1 56 aa9.52□□□□□ -0.89
SF3B3-212ENST00000568539 PP2D1A8MPX8 630 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 EML1O00423 815 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 CHMP2AO43633 222 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 ATG7O95352 703 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 SFNP31947 248 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 NKX3-2P78367 333 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 SP4Q02446 784 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 TMEM132AQ24JP5 1023 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 HSDL1Q3SXM5 330 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 ADALQ6DHV7 355 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 NCAPH2Q6IBW4 605 aa9.51□□□□□ -0.89
SF3B3-212ENST00000568539 SHC4Q6S5L8 630 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms