RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 PCYT2Q99447 389 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 KATNAL1Q9BW62 490 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 SLC9A2Q9UBY0 812 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 GTF2IRD1Q9UHL9 959 aa11.14□□□□□ -0.63
CLK3-220ENST00000567992 COLQQ9Y215 455 aaPredicted RBP11.14□□□□□ -0.63
CLK3-220ENST00000567992 SZT2Q5T011 3432 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 UMODL1Q5DID0 1318 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 EMSYQ7Z589 1322 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 CCDC194A0A1B0GVG4 234 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 BTBD18B2RXH4 712 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 H3BRB1 525 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 IPO5O00410 1097 aaKnown RBP11.13□□□□□ -0.63
CLK3-220ENST00000567992 WNT7AO00755 349 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 SLC37A4O43826 429 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 LGR5O75473 907 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 ACTR2P61160 394 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 MDM2Q00987 491 aaPredicted RBP11.13□□□□□ -0.63
CLK3-220ENST00000567992 GUCY1B3Q02153 619 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 GDF6Q6KF10 455 aaPredicted RBP11.13□□□□□ -0.63
CLK3-220ENST00000567992 MOXD1Q6UVY6 613 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 PIK3AP1Q6ZUJ8 805 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 FBXO18Q8NFZ0 1043 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 ETNPPLQ8TBG4 499 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 SLC5A5Q92911 643 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 GJA10Q969M2 543 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 SDF4Q9BRK5 362 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 ZNF577Q9BSK1 485 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 NOC4LQ9BVI4 516 aaKnown RBP11.13□□□□□ -0.63
CLK3-220ENST00000567992 TUT1Q9H6E5 874 aaKnown RBP11.13□□□□□ -0.63
CLK3-220ENST00000567992 TMEM39AQ9NV64 488 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 HDAC6Q9UBN7 1215 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 SCN5AQ14524 2016 aa11.13□□□□□ -0.63
CLK3-220ENST00000567992 IGKV6D-21A0A0A0MT36 114 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 DDX39AO00148 427 aaKnown RBP11.12□□□□□ -0.63
CLK3-220ENST00000567992 TLR3O15455 904 aaKnown RBP11.12□□□□□ -0.63
CLK3-220ENST00000567992 ATG7O95352 703 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 TIMP1P01033 207 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 CYP2C9P11712 490 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 BMP8BP34820 402 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 CHMP4BP1P59074 171 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 FAM47CQ5HY64 1035 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 UTP14CQ5TAP6 766 aaKnown RBP11.12□□□□□ -0.63
CLK3-220ENST00000567992 B3GNT9Q6UX72 402 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 NEK8Q86SG6 692 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 SEPT1Q8WYJ6 367 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 DHX38Q92620 1227 aaKnown RBP11.12□□□□□ -0.63
CLK3-220ENST00000567992 BADQ92934 168 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 C8orf76Q96K31 380 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 WNT8AQ9H1J5 351 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 PRKAG2Q9UGJ0 569 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 SIP14410 1827 aa11.12□□□□□ -0.63
CLK3-220ENST00000567992 KIF28PB7ZC32 967 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 SMIM10L2AP0DMW4 78 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 SMIM10L2BP0DMW5 78 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 RAG1P15918 1043 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 EPHB4P54760 987 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 ZNF200P98182 395 aaPredicted RBP11.11□□□□□ -0.63
CLK3-220ENST00000567992 CUL4AQ13619 759 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 TRIM29Q14134 588 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 LETM2Q2VYF4 491 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 PPP4R3AQ6IN85 833 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 ABHD15Q6UXT9 468 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 CCDC60Q8IWA6 550 aaPredicted RBP11.11□□□□□ -0.63
CLK3-220ENST00000567992 C7orf31Q8N865 590 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 WNT8BQ93098 351 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 VWCEQ96DN2 955 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 PPP1R12CQ9BZL4 782 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 RNPEPQ9H4A4 650 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 BRMS1Q9HCU9 246 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 KCNMB3Q9NPA1 279 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 TBC1D22BQ9NU19 505 aa11.11□□□□□ -0.63
CLK3-220ENST00000567992 MYH9P35579 1960 aaKnown RBP11.1□□□□□ -0.63
CLK3-220ENST00000567992 PSMD10O75832 226 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 SUPT20HL2P0C7V6 817 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 GJB2P29033 226 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 CYP2C18P33260 490 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 ADAM17P78536 824 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 KRT76Q01546 638 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 PTGISQ16647 500 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 TRIM71Q2Q1W2 868 aaKnown RBP11.1□□□□□ -0.63
CLK3-220ENST00000567992 MFSD5Q6N075 450 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 ZNF746Q6NUN9 644 aaPredicted RBP11.1□□□□□ -0.63
CLK3-220ENST00000567992 FAM184AQ8NB25 1140 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 AFAP1L1Q8TED9 768 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 LMBR1Q8WVP7 490 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 HAS1Q92839 578 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 RIT2Q99578 217 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 HIPK3Q9H422 1215 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 ERAP1Q9NZ08 941 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 DDX25Q9UHL0 483 aaKnown RBP11.1□□□□□ -0.63
CLK3-220ENST00000567992 VAV3Q9UKW4 847 aa11.1□□□□□ -0.63
CLK3-220ENST00000567992 ZNF215Q9UL58 517 aaPredicted RBP11.1□□□□□ -0.63
CLK3-220ENST00000567992 IGSF9BQ9UPX0 1349 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 RBAK-RBAKDNI3L0D1 243 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 PITPNM1O00562 1244 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 CCNT1O60563 726 aaKnown RBP11.09□□□□□ -0.63
CLK3-220ENST00000567992 GCFC2P16383 781 aaKnown RBP11.09□□□□□ -0.63
CLK3-220ENST00000567992 ATP4AP20648 1035 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 MARK3P27448 753 aa11.09□□□□□ -0.63
CLK3-220ENST00000567992 RBL2Q08999 1139 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms