RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 FAM117BQ6P1L5 589 aa18.45■□□□□ 0.54
CLN3-229ENST00000567963 DHX32Q7L7V1 743 aaKnown RBP18.45■□□□□ 0.54
CLN3-229ENST00000567963 HEATR3Q7Z4Q2 680 aa18.45■□□□□ 0.54
CLN3-229ENST00000567963 OSBPL7Q9BZF2 842 aa18.45■□□□□ 0.54
CLN3-229ENST00000567963 RBM28Q9NW13 759 aaKnown RBP18.45■□□□□ 0.54
CLN3-229ENST00000567963 MICAL3Q7RTP6 2002 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 KAT6AQ92794 2004 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 NRCAMQ92823 1304 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 LINC01553A4QN01 128 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 AMHP03971 560 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 ARHGAP4P98171 946 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 TFF2Q03403 129 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 MTMR1Q13613 665 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 ADCK5Q3MIX3 580 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 RASEFQ8IZ41 740 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 ADAMTS19Q8TE59 1207 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 LMBR1Q8WVP7 490 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 SEPT1Q8WYJ6 367 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 TCEANC2Q96MN5 208 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 TGS1Q96RS0 853 aaKnown RBP18.44■□□□□ 0.54
CLN3-229ENST00000567963 JADE2Q9NQC1 790 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 BRPF3Q9ULD4 1205 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 INSL6Q9Y581 213 aa18.44■□□□□ 0.54
CLN3-229ENST00000567963 GSTTP1A0A1W2PQM5 241 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 CTSHP09668 335 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 ERVK-21P61565 698 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 WWC2Q6AWC2 1192 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 MYOCDQ8IZQ8 938 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 IL27Q8NEV9 243 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 SEPT8Q92599 483 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 SUGCTQ9HAC7 445 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 LMCD1Q9NZU5 365 aa18.43■□□□□ 0.54
CLN3-229ENST00000567963 CNTNAP5Q8WYK1 1306 aa18.42■□□□□ 0.54
CLN3-229ENST00000567963 BMP1P13497 986 aa18.42■□□□□ 0.54
CLN3-229ENST00000567963 HTRA4P83105 476 aaPredicted RBP18.42■□□□□ 0.54
CLN3-229ENST00000567963 FUT2Q10981 343 aa18.42■□□□□ 0.54
CLN3-229ENST00000567963 AAK1Q2M2I8 961 aa18.42■□□□□ 0.54
CLN3-229ENST00000567963 FAM26DQ5JW98 314 aa18.42■□□□□ 0.54
CLN3-229ENST00000567963 TYW1BQ6NUM6 668 aa18.42■□□□□ 0.54
CLN3-229ENST00000567963 MTUS1Q9ULD2 1270 aa18.42■□□□□ 0.54
CLN3-229ENST00000567963 COL4A4P53420 1690 aaPredicted RBP18.42■□□□□ 0.54
CLN3-229ENST00000567963 ZBTB43O43298 467 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 RTN1Q16799 776 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 RPAINQ86UA6 219 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 TEX2Q8IWB9 1127 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 GDPD5Q8WTR4 605 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 TOP1MTQ969P6 601 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 UHRF1Q96T88 793 aaPredicted RBP18.41■□□□□ 0.54
CLN3-229ENST00000567963 EHMT1Q9H9B1 1298 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 RIC8AQ9NPQ8 531 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 ERAP1Q9NZ08 941 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 PKD2L1Q9P0L9 805 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 COG5Q9UP83 839 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 V9GY48 417 aaPredicted RBP18.41■□□□□ 0.54
CLN3-229ENST00000567963 SIP14410 1827 aa18.41■□□□□ 0.54
CLN3-229ENST00000567963 TCF20Q9UGU0 1960 aaKnown RBP18.4■□□□□ 0.54
CLN3-229ENST00000567963 CDC45O75419 566 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 NAPAP54920 295 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 KRT32Q14532 448 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 TAF2Q6P1X5 1199 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 APBB2Q92870 758 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 GLG1Q92896 1179 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 MXRA8Q9BRK3 442 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 SMARCAD1Q9H4L7 1026 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 KCNH7Q9NS40 1196 aa18.4■□□□□ 0.54
CLN3-229ENST00000567963 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.39■□□□□ 0.54
CLN3-229ENST00000567963 CHRNA1P02708 482 aa18.39■□□□□ 0.54
CLN3-229ENST00000567963 HMGB1P09429 215 aaKnown RBP18.39■□□□□ 0.54
CLN3-229ENST00000567963 MARK3P27448 753 aa18.39■□□□□ 0.54
CLN3-229ENST00000567963 KCNQ1P51787 676 aa18.39■□□□□ 0.54
CLN3-229ENST00000567963 PPFIA1Q13136 1202 aa18.39■□□□□ 0.54
CLN3-229ENST00000567963 PPP1R18Q6NYC8 613 aa18.39■□□□□ 0.54
CLN3-229ENST00000567963 RUFY4Q6ZNE9 571 aa18.39■□□□□ 0.54
CLN3-229ENST00000567963 CYP2W1Q8TAV3 490 aa18.39■□□□□ 0.54
CLN3-229ENST00000567963 SP7Q8TDD2 431 aaPredicted RBP18.39■□□□□ 0.54
CLN3-229ENST00000567963 IFIH1Q9BYX4 1025 aaKnown RBP18.39■□□□□ 0.54
CLN3-229ENST00000567963 FAM217BQ9NTX9 383 aaPredicted RBP18.39■□□□□ 0.54
CLN3-229ENST00000567963 KLF18A0A0U1RQI7 1052 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 MBLAC1A4D2B0 266 aaPredicted RBP18.39■□□□□ 0.53
CLN3-229ENST00000567963 hCG_1984214I3L0E3 225 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 STXBP3O00186 592 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 FOSP01100 380 aaPredicted RBP18.39■□□□□ 0.53
CLN3-229ENST00000567963 CDC27P30260 824 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 GRIK4Q16099 956 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 MARCH8Q5T0T0 291 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 ZNF713Q8N859 430 aaPredicted RBP18.39■□□□□ 0.53
CLN3-229ENST00000567963 HLA-CQ95604 372 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 C17orf80Q9BSJ5 609 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 JPH1Q9HDC5 661 aaPredicted RBP18.39■□□□□ 0.53
CLN3-229ENST00000567963 BARHL2Q9NY43 387 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 SLC9A2Q9UBY0 812 aa18.39■□□□□ 0.53
CLN3-229ENST00000567963 SMCO2A6NFE2 343 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 GOLGA8AA7E2F4 631 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 GOLGA8BA8MQT2 603 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 UPP2O95045 317 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 ADCY7P51828 1080 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 RCAN1P53805 252 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 PGBD1Q96JS3 809 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 PCYT2Q99447 389 aa18.38■□□□□ 0.53
CLN3-229ENST00000567963 TUBE1Q9UJT0 475 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms