RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 POLR2MP0CAP2 368 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SPDYE6P0CI01 402 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SPATA31C1P0DKV0 1188 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 TCP1P17987 556 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 RPL13P26373 211 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 EIF4A3P38919 411 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 USP14P54578 494 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SETQ01105 290 aaPredicted RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 KCNMA1Q12791 1236 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 IKQ13123 557 aaPredicted RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 PPP2R5CQ13362 524 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 GIT2Q14161 759 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 LRRC41Q15345 812 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 ASTE1Q2TB18 679 aaPredicted RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 SPDYE2Q495Y8 402 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 MAP9Q49MG5 647 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SLC9C1Q4G0N8 1177 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 PRR16Q569H4 304 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 BEND6Q5SZJ8 279 aaPredicted RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 C10orf76Q5T2E6 689 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SFMBT2Q5VUG0 894 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 MSL1Q68DK7 614 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 NCAPH2Q6IBW4 605 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 CCDC70Q6NSX1 233 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 STXBP4Q6ZWJ1 553 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 FAM83AQ86UY5 434 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 CATSPER3Q86XQ3 398 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SAMD3Q8N6K7 520 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 NEK9Q8TD19 979 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 CSRNP1Q96S65 589 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 GMLQ99445 158 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 LSM14BQ9BX40 385 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 FUT8Q9BYC5 575 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 IFIH1Q9BYX4 1025 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 TANGO6Q9C0B7 1094 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 VIPAS39Q9H9C1 493 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.9□□□□□ -1.3
CLN3-223ENST00000566472 PLCB1Q9NQ66 1216 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 OLFML3Q9NRN5 406 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 FAM207AQ9NSI2 230 aaPredicted RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 EMILIN3Q9NT22 766 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 GINM1Q9NU53 330 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 TYW1Q9NV66 732 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 STK32BQ9NY57 414 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 KCND2Q9NZV8 630 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 ARHGAP20Q9P2F6 1191 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 RNF14Q9UBS8 474 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 SEL1LQ9UBV2 794 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 FBXL5Q9UKA1 691 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 PNMA2Q9UL42 364 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 ZBTB21Q9ULJ3 1066 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 MRPL11Q9Y3B7 192 aaKnown RBP6.9□□□□□ -1.3
CLN3-223ENST00000566472 HYOU1Q9Y4L1 999 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 PCDHA13Q9Y5I0 950 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 PCDHAC2Q9Y5I4 1007 aa6.9□□□□□ -1.3
CLN3-223ENST00000566472 IGLV3-22A0A075B6J6 115 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 A0A1W2PRG0 241 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 POTEFA5A3E0 1075 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 RCCD1A6NED2 376 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 YDJCA8MPS7 323 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 BTNL10A8MVZ5 291 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 FAM86B1E9PN63 330 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 OPLAHO14841 1288 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 ZNF263O14978 683 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 EPHB6O15197 1021 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 RAD21O60216 631 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 AKR1B10O60218 316 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 SASH3O75995 380 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 GFPT2O94808 682 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 SEC31AO94979 1220 aaKnown RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 ABL1P00519 1130 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 FAM86B2P0C5J1 330 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 POTEIP0CG38 1075 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 CHRNA5P30532 468 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 ZNF76P36508 570 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 STAT3P40763 770 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 MAGEA1P43355 309 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 PRELPP51888 382 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 GHRHRQ02643 423 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 ADAM9Q13443 819 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 SMC1AQ14683 1233 aaKnown RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 DLGAP5Q15398 846 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 KNOP1Q1ED39 458 aaKnown RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 ARSHQ5FYA8 562 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 FAM83BQ5T0W9 1011 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 HGSNATQ68CP4 663 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 POTEGQ6S5H5 508 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 POTEEQ6S8J3 1075 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 RRAGAQ7L523 313 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 KRT26Q7Z3Y9 468 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 FMNL3Q8IVF7 1028 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 MMGT1Q8N4V1 131 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 GLIS3Q8NEA6 775 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 AGBL3Q8NEM8 1001 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 SLC5A5Q92911 643 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 PRMT6Q96LA8 375 aaPredicted RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 P2RX7Q99572 595 aaKnown RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 EIF2AK1Q9BQI3 630 aaKnown RBP6.89□□□□□ -1.31
CLN3-223ENST00000566472 REEP2Q9BRK0 252 aa6.89□□□□□ -1.31
CLN3-223ENST00000566472 MKNK1Q9BUB5 465 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms