RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 LETM2Q2VYF4 491 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 FOXR1Q6PIV2 292 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 CCDC84Q86UT8 332 aaPredicted RBP14.63□□□□□ -0.07
VPS4A-204ENST00000566354 LRRC47Q8N1G4 583 aaKnown RBP14.63□□□□□ -0.07
VPS4A-204ENST00000566354 SPZ1Q9BXG8 430 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 DEFB129Q9H1M3 183 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 PCDHA13Q9Y5I0 950 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 MYH4Q9Y623 1939 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 GRIN3BO60391 1043 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 LCA5LO95447 670 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 ORC2Q13416 577 aaPredicted RBP14.63□□□□□ -0.07
VPS4A-204ENST00000566354 SEPT2Q15019 361 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 VWA3BQ502W6 1294 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 FAM43BQ6ZT52 329 aaPredicted RBP14.63□□□□□ -0.07
VPS4A-204ENST00000566354 NEK8Q86SG6 692 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 AENQ8WTP8 325 aaKnown RBP14.63□□□□□ -0.07
VPS4A-204ENST00000566354 CALML4Q96GE6 196 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 SH2D4AQ9H788 454 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 C6orf50Q9HD87 102 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 GGA3Q9NZ52 723 aa14.63□□□□□ -0.07
VPS4A-204ENST00000566354 ABCB11O95342 1321 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 KLRF2D3W0D1 207 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 FGFR1OPO95684 399 aaKnown RBP14.62□□□□□ -0.07
VPS4A-204ENST00000566354 MYBL2P10244 700 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 NAPAP54920 295 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 ATP2B2Q01814 1243 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 C2orf54Q08AI8 447 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 ABCB5Q2M3G0 1257 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 PRAMEF18Q5VWM3 479 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 KIAA0895Q8NCT3 520 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 NDST4Q9H3R1 872 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 SEMA6BQ9H3T3 888 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 ARHGAP20Q9P2F6 1191 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 RSPH14Q9UHP6 348 aa14.62□□□□□ -0.07
VPS4A-204ENST00000566354 GOLGA6BA6NDN3 693 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 TTC36A6NLP5 189 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 AGPSO00116 658 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 TTLL1O95922 423 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 GH2P01242 217 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 TCP1P17987 556 aaKnown RBP14.61□□□□□ -0.07
VPS4A-204ENST00000566354 TECP42680 631 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 KRT26Q7Z3Y9 468 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 GDAP1L1Q96MZ0 367 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 ALS2CR12Q96Q35 445 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 SIK3Q9Y2K2 1263 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 PVALEFA0A1B0GWK0 134 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 SMCO2A6NFE2 343 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 KIF1CO43896 1103 aaKnown RBP14.61□□□□□ -0.07
VPS4A-204ENST00000566354 PLEKP08567 350 aaPredicted RBP14.61□□□□□ -0.07
VPS4A-204ENST00000566354 GOLGA8HP0CJ92 632 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 HOXA7P31268 230 aaPredicted RBP14.61□□□□□ -0.07
VPS4A-204ENST00000566354 KIF11P52732 1056 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 DPY19L2Q6NUT2 758 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 SV2BQ7L1I2 683 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 FAM76AQ8TAV0 307 aa14.61□□□□□ -0.07
VPS4A-204ENST00000566354 RIN2Q8WYP3 895 aaPredicted RBP14.61□□□□□ -0.07
VPS4A-204ENST00000566354 MMTAG2Q9BU76 263 aaKnown RBP14.61□□□□□ -0.07
VPS4A-204ENST00000566354 SHOX2O60902 331 aaPredicted RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 MAGEA9P43362 315 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 MAN2A1Q16706 1144 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 NBPF12Q5TAG4 269 aaPredicted RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 USP17L2Q6R6M4 530 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 TMEM179Q6ZVK1 233 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 SIAH1Q8IUQ4 282 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 SPATA4Q8NEY3 305 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 DEF6Q9H4E7 631 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 SLC39A2Q9NP94 309 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 ADARB2Q9NS39 739 aaKnown RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 STK17AQ9UEE5 414 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 CAPN6Q9Y6Q1 641 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 AKR1B10O60218 316 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 TBC1D12O60347 775 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 EEF2P13639 858 aaKnown RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 SMARCA1P28370 1054 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 EIF4A3P38919 411 aaKnown RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 UNC13DQ70J99 1090 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 GSPT2Q8IYD1 628 aaKnown RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 SMCR8Q8TEV9 937 aaPredicted RBP14.6□□□□□ -0.07
VPS4A-204ENST00000566354 OSBPL9Q96SU4 736 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 HYOU1Q9Y4L1 999 aa14.6□□□□□ -0.07
VPS4A-204ENST00000566354 GOLGA6CA6NDK9 693 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 USP17L5A8MUK1 530 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 GOLGA6DP0CG33 693 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 GUF1Q8N442 669 aaKnown RBP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 RRP36Q96EU6 259 aaKnown RBP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 LRRC1Q9BTT6 524 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 EDEM3Q9BZQ6 932 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 CPVLQ9H3G5 476 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 KANSL2Q9H9L4 492 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 FAM207AQ9NSI2 230 aaPredicted RBP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 GOLGA6AQ9NYA3 693 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 NKRFO15226 690 aaKnown RBP eCLIP14.59□□□□□ -0.07
VPS4A-204ENST00000566354 PJA2O43164 708 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 MOCS3O95396 460 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 CCDC172P0C7W6 258 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 PDHBP11177 359 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 CORO7P57737 925 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 MAP3K10Q02779 954 aa14.59□□□□□ -0.07
VPS4A-204ENST00000566354 ICA1Q05084 483 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms