RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HSCBQ8IWL3 235 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 VWCEQ96DN2 955 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 C8orf76Q96K31 380 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 GJB4Q9NTQ9 266 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 SCN5AQ14524 2016 aa19.63■□□□□ 0.73
CLN3-217ENST00000565354 CCDC194A0A1B0GVG4 234 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 ZBBXA8MT70 800 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 FIBPO43427 364 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 ARIH2O95376 493 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 GH1P01241 217 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 KCNQ1P51787 676 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 ARHGAP4P98171 946 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 SAFBQ15424 915 aaKnown RBP eCLIP19.62■□□□□ 0.73
CLN3-217ENST00000565354 SKIV2LQ15477 1246 aaKnown RBP19.62■□□□□ 0.73
CLN3-217ENST00000565354 LY6KQ17RY6 165 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 KRT25Q7Z3Z0 450 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 COPS5Q92905 334 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 CDHR1Q96JP9 859 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 INPP4AQ96PE3 977 aaPredicted RBP19.62■□□□□ 0.73
CLN3-217ENST00000565354 SMC3Q9UQE7 1217 aa19.62■□□□□ 0.73
CLN3-217ENST00000565354 ADAMTS3O15072 1205 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 TGFB3P10600 412 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 POU3F3P20264 500 aaPredicted RBP19.61■□□□□ 0.73
CLN3-217ENST00000565354 PTGS1P23219 599 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 HOXD11P31277 338 aaPredicted RBP19.61■□□□□ 0.73
CLN3-217ENST00000565354 PSMC6P62333 389 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 TMEM63BQ5T3F8 832 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 KRT40Q6A162 431 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 DHX37Q8IY37 1157 aaKnown RBP19.61■□□□□ 0.73
CLN3-217ENST00000565354 GPRASP2Q96D09 838 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 SCLYQ96I15 445 aa19.61■□□□□ 0.73
CLN3-217ENST00000565354 DDX41Q9UJV9 622 aaKnown RBP19.61■□□□□ 0.73
CLN3-217ENST00000565354 BRWD1Q9NSI6 2320 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 K7ELQ4 463 aaPredicted RBP19.6■□□□□ 0.73
CLN3-217ENST00000565354 RGS20O76081 388 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 PFKMP08237 780 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 CPT1AP50416 773 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 GUCY1B3Q02153 619 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 MTMR1Q13613 665 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 GNL2Q13823 731 aaKnown RBP19.6■□□□□ 0.73
CLN3-217ENST00000565354 NONOQ15233 471 aaKnown RBP eCLIP19.6■□□□□ 0.73
CLN3-217ENST00000565354 CCDC62Q6P9F0 684 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 MXRA8Q9BRK3 442 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 MLXIPQ9HAP2 919 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 JADE2Q9NQC1 790 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 UBIAD1Q9Y5Z9 338 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 MTCH2Q9Y6C9 303 aa19.6■□□□□ 0.73
CLN3-217ENST00000565354 GTPBP6O43824 516 aaPredicted RBP19.59■□□□□ 0.73
CLN3-217ENST00000565354 SORBS3O60504 671 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 GGPS1O95749 300 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 MMP1P03956 469 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 GJB2P29033 226 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 ICAM3P32942 547 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 NEDD9Q14511 834 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 TBCKQ8TEA7 893 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 PKD2L1Q9P0L9 805 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 ARIH1Q9Y4X5 557 aaPredicted RBP19.59■□□□□ 0.73
CLN3-217ENST00000565354 PIEZO1Q92508 2521 aa19.59■□□□□ 0.73
CLN3-217ENST00000565354 SPATA31C2B4DYI2 1134 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 RFXAPO00287 272 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 CA3P07451 260 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 MYL3P08590 195 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 CYP3A4P08684 503 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 UBA1P22314 1058 aaKnown RBP19.58■□□□□ 0.72
CLN3-217ENST00000565354 LAMC2Q13753 1193 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 NPY5RQ15761 445 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 CEP55Q53EZ4 464 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 DIS3L2Q8IYB7 885 aaKnown RBP19.58■□□□□ 0.72
CLN3-217ENST00000565354 SNX21Q969T3 373 aa19.58■□□□□ 0.72
CLN3-217ENST00000565354 M0R2N6 131 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 MAFGO15525 162 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 SUPT20HL2P0C7V6 817 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 ITGB5P18084 799 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 CELF3Q5SZQ8 465 aaKnown RBP19.57■□□□□ 0.72
CLN3-217ENST00000565354 PIK3AP1Q6ZUJ8 805 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 PLA2G4DQ86XP0 818 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 GIMAP8Q8ND71 665 aaPredicted RBP19.57■□□□□ 0.72
CLN3-217ENST00000565354 OXER1Q8TDS5 423 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 SPATA33Q96N06 139 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 LRFN3Q9BTN0 628 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 TRMT13Q9NUP7 481 aaKnown RBP19.57■□□□□ 0.72
CLN3-217ENST00000565354 POLR3EQ9NVU0 708 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 COG5Q9UP83 839 aa19.57■□□□□ 0.72
CLN3-217ENST00000565354 SCN10AQ9Y5Y9 1956 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 H3BQV1 296 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 NOP56O00567 594 aaKnown RBP19.56■□□□□ 0.72
CLN3-217ENST00000565354 HSP90AA1P07900 732 aaKnown RBP19.56■□□□□ 0.72
CLN3-217ENST00000565354 CYP2C9P11712 490 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 USP11P51784 963 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 SETQ01105 290 aaPredicted RBP19.56■□□□□ 0.72
CLN3-217ENST00000565354 ARHGAP1Q07960 439 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 SEMA3FQ13275 785 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 NR5A1Q13285 461 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 CUL4AQ13619 759 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 INF2Q27J81 1249 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 CYFIP1Q7L576 1253 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 NIPA1Q7RTP0 329 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 DEFB128Q7Z7B8 93 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 TET1Q8NFU7 2136 aa19.56■□□□□ 0.72
CLN3-217ENST00000565354 AFG1LQ8WV93 481 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms