RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 DEFB103AP81534 67 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 BLOC1S2Q6QNY1 142 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 FBXL16Q8N461 479 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 GIMAP8Q8ND71 665 aaPredicted RBP12.4□□□□□ -0.42
VPS39-208ENST00000564994 CDHR1Q96JP9 859 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 GAS2L1Q99501 681 aaPredicted RBP12.4□□□□□ -0.42
VPS39-208ENST00000564994 AGXT2Q9BYV1 514 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 NAP1L2Q9ULW6 460 aaPredicted RBP12.4□□□□□ -0.42
VPS39-208ENST00000564994 NID2Q14112 1375 aa12.4□□□□□ -0.42
VPS39-208ENST00000564994 XIRP2A4UGR9 3374 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 RSPH10B2B2RC85 870 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 hCG_1984214I3L0E3 225 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 RSPH10BP0C881 870 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 FGD1P98174 961 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 PKN1Q16512 942 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 PFKFB3Q16875 520 aaPredicted RBP12.39□□□□□ -0.43
VPS39-208ENST00000564994 SPRED2Q7Z698 418 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 ZNF713Q8N859 430 aaPredicted RBP12.39□□□□□ -0.43
VPS39-208ENST00000564994 LMBR1Q8WVP7 490 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 SEPT1Q8WYJ6 367 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 MXRA8Q9BRK3 442 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 COL25A1Q9BXS0 654 aaPredicted RBP12.39□□□□□ -0.43
VPS39-208ENST00000564994 ANO3Q9BYT9 981 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 CERS4Q9HA82 394 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 PRDM6Q9NQX0 595 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 KCNH7Q9NS40 1196 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 ZNF215Q9UL58 517 aaPredicted RBP12.39□□□□□ -0.43
VPS39-208ENST00000564994 MUC3AQ02505 3323 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 WDR81Q562E7 1941 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 LOXHD1Q8IVV2 1947 aa12.39□□□□□ -0.43
VPS39-208ENST00000564994 COL4A4P53420 1690 aaPredicted RBP12.38□□□□□ -0.43
VPS39-208ENST00000564994 ABHD14A-ACY1A0A1B0GW23 586 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 LCHNA4D1U4 455 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 EPOPA6NHQ4 379 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 RFXAPO00287 272 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 MAFGO15525 162 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 LGR5O75473 907 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 REC8O95072 547 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 FOSP01100 380 aaPredicted RBP12.38□□□□□ -0.43
VPS39-208ENST00000564994 CTSHP09668 335 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 ARP10275 920 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 SCG2P13521 617 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 IGFBP4P22692 258 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 KCNJ6P48051 423 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 ARHGAP4P98171 946 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 TAP1Q03518 808 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 MKRN4PQ13434 485 aaPredicted RBP12.38□□□□□ -0.43
VPS39-208ENST00000564994 NTRK3Q16288 839 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 TEX2Q8IWB9 1127 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 DBF4BQ8NFT6 615 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 PPM1EQ8WY54 764 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 PCYT2Q99447 389 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 EHMT1Q9H9B1 1298 aa12.38□□□□□ -0.43
VPS39-208ENST00000564994 CCDC196A0A1B0GTZ2 297 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 MEIS1O00470 390 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 TLL1O43897 1013 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 PPFIA3O75145 1194 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 GNAT1P11488 350 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 MARK3P27448 753 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 SREBF1P36956 1147 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 EVCP57679 992 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 ITGB3BPQ13352 177 aaPredicted RBP12.37□□□□□ -0.43
VPS39-208ENST00000564994 AP3B2Q13367 1082 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 IKBKEQ14164 716 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 CEP55Q53EZ4 464 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 PLEKHG4Q58EX7 1191 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 JAKMIP3Q5VZ66 844 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.37□□□□□ -0.435e-15■■■■■ 70.4
VPS39-208ENST00000564994 RUFY4Q6ZNE9 571 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 CRYGNQ8WXF5 182 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 PHKBQ93100 1093 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 AGO4Q9HCK5 861 aaKnown RBP12.37□□□□□ -0.43
VPS39-208ENST00000564994 JPH1Q9HDC5 661 aaPredicted RBP12.37□□□□□ -0.43
VPS39-208ENST00000564994 EMSYQ7Z589 1322 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 NRCAMQ92823 1304 aa12.37□□□□□ -0.43
VPS39-208ENST00000564994 MYH9P35579 1960 aaKnown RBP12.36□□□□□ -0.43
VPS39-208ENST00000564994 ESYT2A0FGR8 921 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 KIF28PB7ZC32 967 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 FAM86B1E9PN63 330 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 PRPF3O43395 683 aaKnown RBP12.36□□□□□ -0.43
VPS39-208ENST00000564994 EPB41L2O43491 1005 aaKnown RBP12.36□□□□□ -0.43
VPS39-208ENST00000564994 CAND2O75155 1236 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 GJB5O95377 273 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 FAM86B2P0C5J1 330 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 PSMA5P28066 241 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 PDIA3P30101 505 aaKnown RBP12.36□□□□□ -0.43
VPS39-208ENST00000564994 TOB2Q14106 344 aaPredicted RBP12.36□□□□□ -0.43
VPS39-208ENST00000564994 CCDC85BQ15834 202 aaPredicted RBP12.36□□□□□ -0.43
VPS39-208ENST00000564994 FAM26DQ5JW98 314 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 MARCH8Q5T0T0 291 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 ARNTL2Q8WYA1 636 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 GLG1Q92896 1179 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 ZBTB10Q96DT7 871 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 ZMYND12Q9H0C1 365 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 GLT8D2Q9H1C3 349 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 SMARCAD1Q9H4L7 1026 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 NCOA5Q9HCD5 579 aaKnown RBP12.36□□□□□ -0.43
VPS39-208ENST00000564994 ZSWIM6Q9HCJ5 1215 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 ERAP1Q9NZ08 941 aa12.36□□□□□ -0.43
VPS39-208ENST00000564994 SLC9A2Q9UBY0 812 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms