RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 LUC7LQ9NQ29 371 aaKnown RBP6.28□□□□□ -1.4
VPS35-205ENST00000563984 GOLGA6AQ9NYA3 693 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 ZNF652Q9Y2D9 606 aa6.28□□□□□ -1.4
VPS35-205ENST00000563984 ABCC9O60706 1549 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 SH3D21A4FU49 640 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 EPB41L2O43491 1005 aaKnown RBP6.27□□□□□ -1.41
VPS35-205ENST00000563984 DHX16O60231 1041 aaKnown RBP6.27□□□□□ -1.41
VPS35-205ENST00000563984 MAP4K4O95819 1239 aaPredicted RBP6.27□□□□□ -1.41
VPS35-205ENST00000563984 CYP2C8P10632 490 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 RGS3P49796 1198 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 ZXDAP98168 799 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 IFRD2Q12894 506 aaPredicted RBP6.27□□□□□ -1.41
VPS35-205ENST00000563984 ZKSCAN8Q15776 578 aaPredicted RBP6.27□□□□□ -1.41
VPS35-205ENST00000563984 MTERF2Q49AM1 385 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 VWA3BQ502W6 1294 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 ZKSCAN2Q63HK3 967 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 STEAP3Q658P3 488 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 CLEC4GQ6UXB4 293 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 SPATC1Q76KD6 591 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 ZC3H18Q86VM9 953 aaKnown RBP6.27□□□□□ -1.41
VPS35-205ENST00000563984 FAM126BQ8IXS8 530 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 FAM43AQ8N2R8 423 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 PHF20Q9BVI0 1012 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 RAI14Q9P0K7 980 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 PNMA2Q9UL42 364 aa6.27□□□□□ -1.41
VPS35-205ENST00000563984 NISCHQ9Y2I1 1504 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 MAFKO60675 156 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 TADA3O75528 432 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 TNFRSF1AP19438 455 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 SCP2P22307 547 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 SSRP1Q08945 709 aaKnown RBP6.26□□□□□ -1.41
VPS35-205ENST00000563984 MTA1Q13330 715 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 SERINC3Q13530 473 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 STYK1Q6J9G0 422 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 DDX46Q7L014 1031 aaKnown RBP6.26□□□□□ -1.41
VPS35-205ENST00000563984 FRMD5Q7Z6J6 570 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 ANKRD23Q86SG2 305 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 SCUBE1Q8IWY4 988 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 LINC00482Q8N8I6 264 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 PHOSPHO1Q8TCT1 267 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS35-205ENST00000563984 UBXN4Q92575 508 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 EVI5LQ96CN4 794 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 SPATA25Q9BR10 227 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 CDIP1Q9H305 208 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 RBM28Q9NW13 759 aaKnown RBP6.26□□□□□ -1.41
VPS35-205ENST00000563984 COMMD10Q9Y6G5 202 aa6.26□□□□□ -1.41
VPS35-205ENST00000563984 CCDC85CA6NKD9 419 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 KRIT1O00522 736 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 ADCY3O60266 1144 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 MSCO60682 206 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 C8BP07358 591 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 COPB2P35606 906 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 KCNC1P48547 511 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 SLURP1P55000 103 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 MAP2K1Q02750 393 aaPredicted RBP6.25□□□□□ -1.41
VPS35-205ENST00000563984 ZRSR2Q15696 482 aaKnown RBP6.25□□□□□ -1.41
VPS35-205ENST00000563984 NTRK3Q16288 839 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 KIZQ2M2Z5 673 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 CYP4F22Q6NT55 531 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 CD300LDQ6UXZ3 194 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 LBX2Q6XYB7 198 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 LIPIQ6XZB0 460 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 GET4Q7L5D6 327 aaPredicted RBP6.25□□□□□ -1.41
VPS35-205ENST00000563984 IFNL3Q8IZI9 196 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 ZBTB38Q8NAP3 1195 aaPredicted RBP6.25□□□□□ -1.41
VPS35-205ENST00000563984 ZBTB8AQ96BR9 441 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 DDX11Q96FC9 970 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 IPO9Q96P70 1041 aaKnown RBP6.25□□□□□ -1.41
VPS35-205ENST00000563984 NOX5Q96PH1 765 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 YIPF4Q9BSR8 244 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 SMOC1Q9H4F8 434 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 SLC6A20Q9NP91 592 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 GEMIN8Q9NWZ8 242 aaKnown RBP6.25□□□□□ -1.41
VPS35-205ENST00000563984 PCDHB4Q9Y5E5 795 aa6.25□□□□□ -1.41
VPS35-205ENST00000563984 TCRBV5S2A0A599 114 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 ZNF500O60304 480 aaPredicted RBP6.24□□□□□ -1.41
VPS35-205ENST00000563984 PAX3P23760 479 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 RHBDL3P58872 404 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 GPR85P60893 370 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 NKX3-2P78367 333 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 DLX2Q07687 328 aaPredicted RBP6.24□□□□□ -1.41
VPS35-205ENST00000563984 RTP5Q14D33 572 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 LONRF2Q1L5Z9 754 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 YOD1Q5VVQ6 348 aaPredicted RBP6.24□□□□□ -1.41
VPS35-205ENST00000563984 KCNT2Q6UVM3 1135 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 TTLL7Q6ZT98 887 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 TRIM48Q8IWZ4 208 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 SMAP1Q8IYB5 467 aaPredicted RBP6.24□□□□□ -1.41
VPS35-205ENST00000563984 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS35-205ENST00000563984 CDC6Q99741 560 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 GORASP1Q9BQQ3 440 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 C11orf84Q9BUA3 381 aaPredicted RBP6.24□□□□□ -1.41
VPS35-205ENST00000563984 MAF1Q9H063 256 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 PDCL3Q9H2J4 239 aa6.24□□□□□ -1.41
VPS35-205ENST00000563984 PRICKLE3O43900 615 aaPredicted RBP6.23□□□□□ -1.41
VPS35-205ENST00000563984 TNNT2P45379 298 aaPredicted RBP6.23□□□□□ -1.41
VPS35-205ENST00000563984 RASA3Q14644 834 aa6.23□□□□□ -1.41
VPS35-205ENST00000563984 ZC3H12BQ5HYM0 836 aaKnown RBP6.23□□□□□ -1.41
VPS35-205ENST00000563984 UTP14CQ5TAP6 766 aaKnown RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms