RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 CEP63Q96MT8 703 aa15.33■□□□□ 0.04
VPS9D1-202ENST00000561976 UIMC1Q96RL1 719 aa15.33■□□□□ 0.04
VPS9D1-202ENST00000561976 FGFBP2Q9BYJ0 223 aa15.33■□□□□ 0.04
VPS9D1-202ENST00000561976 GOLPH3Q9H4A6 298 aa15.33■□□□□ 0.04
VPS9D1-202ENST00000561976 ZHX3Q9H4I2 956 aa15.33■□□□□ 0.04
VPS9D1-202ENST00000561976 FNTAP49354 379 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 ERVK-9P63128 1117 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 ODF2Q5BJF6 829 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 EMC10Q5UCC4 262 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 ISCUQ9H1K1 167 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 TMBIM4Q9HC24 238 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 GEMIN8Q9NWZ8 242 aaKnown RBP15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 TMCO5BA8MYB1 307 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 FAM107AO95990 144 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 CTNNA1P35221 906 aaKnown RBP15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 HSD17B3P37058 310 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 HERC4Q5GLZ8 1057 aaPredicted RBP15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 DDX42Q86XP3 938 aaKnown RBP eCLIP15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 TRIM59Q8IWR1 403 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 CCDC65Q8IXS2 484 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 SPAG5Q96R06 1193 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 SETDB2Q96T68 719 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 MYCBPQ99417 103 aaPredicted RBP15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 AP1M1Q9BXS5 423 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 NYXQ9GZU5 481 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 PLCB1Q9NQ66 1216 aa15.32■□□□□ 0.04
VPS9D1-202ENST00000561976 KIF4AO95239 1232 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 SMARCA1P28370 1054 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 PPP4CP60510 307 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 ADAM9Q13443 819 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 SEPT2Q15019 361 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 UBE2SQ16763 222 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 FOXR2Q6PJQ5 311 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 C16orf86Q6ZW13 317 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 TEX11Q8IYF3 940 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 LRRC45Q96CN5 670 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 AIPL1Q9NZN9 384 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 DDX25Q9UHL0 483 aaKnown RBP15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 MAST2Q6P0Q8 1798 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 BTDP43251 543 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 PPP4R3AQ6IN85 833 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 YTHDF3Q7Z739 585 aaKnown RBP15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 DNAAF5Q86Y56 855 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 MARCH10Q8NA82 808 aaPredicted RBP15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 C1orf131Q8NDD1 294 aaKnown RBP15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 UBLCP1Q8WVY7 318 aaPredicted RBP15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 RIOX1Q9H6W3 641 aa15.31■□□□□ 0.04
VPS9D1-202ENST00000561976 NPHP3-ACAD11A0A0J9YXS1 232 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 E9PMD0 336 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 KRT18P05783 430 aaKnown RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 ACTN1P12814 892 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 PTK2Q05397 1052 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 KCNH2Q12809 1159 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 CUL1Q13616 776 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 IFI16Q16666 785 aaKnown RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 LRIG3Q6UXM1 1119 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 PBKQ96KB5 322 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 PAGR1Q9BTK6 254 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 GPCPD1Q9NPB8 672 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 PCDHA12Q9UN75 941 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 ZNF335Q9H4Z2 1342 aaPredicted RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 STRCQ7RTU9 1775 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 EDIL3O43854 480 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 LINC00116Q8NCU8 138 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 TMEM59LQ9UK28 342 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 KIAA1024Q9UPX6 916 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 SNED1Q8TER0 1413 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 hCG_1984214I3L0E3 225 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 CETN3O15182 167 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 KCNQ2O43526 872 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 MYBP10242 640 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 USP11P51784 963 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 EIF6P56537 245 aaKnown RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 KCTD19Q17RG1 926 aaPredicted RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 GPBP1Q86WP2 473 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 TEX2Q8IWB9 1127 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 LRRC47Q8N1G4 583 aaKnown RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 ZNF713Q8N859 430 aaPredicted RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 CYFIP2Q96F07 1278 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 DDX47Q9H0S4 455 aaKnown RBP15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 GANQ9H2C0 597 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 EMILIN3Q9NT22 766 aa15.3■□□□□ 0.04
VPS9D1-202ENST00000561976 PGRMC1O00264 195 aaKnown RBP15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 SART1O43290 800 aaKnown RBP15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 PDHBP11177 359 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 RUFY4Q6ZNE9 571 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 CCDC121Q6ZUS5 278 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 SLC51AQ86UW1 340 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 GPR101Q96P66 508 aaPredicted RBP15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 NT5C3AQ9H0P0 336 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 KRIT1O00522 736 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 C10orf76Q5T2E6 689 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 ZNF571Q7Z3V5 609 aaPredicted RBP15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 SCFD2Q8WU76 684 aa15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 CDCA7Q9BWT1 371 aaPredicted RBP15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 RTFDC1Q9BY42 306 aaPredicted RBP15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 SRP68Q9UHB9 627 aaKnown RBP15.29■□□□□ 0.04
VPS9D1-202ENST00000561976 LOC102724159A0A0B4J2E5 919 aa15.28■□□□□ 0.04
VPS9D1-202ENST00000561976 GMNCA6NCL1 334 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms