RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CT47A1Q5JQC4 288 aaPredicted RBP23.74■■□□□ 1.39
CLN3-209ENST00000561689 UNC13DQ70J99 1090 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 FAM133AQ8N9E0 248 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 BANK1Q8NDB2 785 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 PIGOQ8TEQ8 1089 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 GTF3C2Q8WUA4 911 aaPredicted RBP23.74■■□□□ 1.39
CLN3-209ENST00000561689 MMP19Q99542 508 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 MROH8Q9H579 483 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 EFCC1Q9HA90 598 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 BMP2KQ9NSY1 1161 aaPredicted RBP23.74■■□□□ 1.39
CLN3-209ENST00000561689 NFE2L3Q9Y4A8 694 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 SAMM50Q9Y512 469 aa23.74■■□□□ 1.39
CLN3-209ENST00000561689 ATP1A3P13637 1013 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 CYP11B2P19099 503 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 ZNF75DP51815 510 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 RAD51AP2Q09MP3 1159 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 STK4Q13043 487 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 KCTD2Q14681 263 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 HSP90AA4PQ58FG1 418 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 CNNM4Q6P4Q7 775 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 SARM1Q6SZW1 724 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 DNAJC19Q96DA6 116 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 BHMT2Q9H2M3 363 aa23.73■■□□□ 1.39
CLN3-209ENST00000561689 PVALEFA0A1B0GWK0 134 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 ZBTB39O15060 712 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 EIF3JO75822 258 aaKnown RBP23.72■■□□□ 1.39
CLN3-209ENST00000561689 STAM2O75886 525 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 ARSHQ5FYA8 562 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 SAPCD2Q86UD0 394 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 RASAL3Q86YV0 1011 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 SYT2Q8N9I0 419 aaPredicted RBP23.72■■□□□ 1.39
CLN3-209ENST00000561689 LXNQ9BS40 222 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 GPBP1L1Q9HC44 474 aaPredicted RBP23.72■■□□□ 1.39
CLN3-209ENST00000561689 RRAGDQ9NQL2 400 aaPredicted RBP23.72■■□□□ 1.39
CLN3-209ENST00000561689 ADD3Q9UEY8 706 aaKnown RBP23.72■■□□□ 1.39
CLN3-209ENST00000561689 MAFGO15525 162 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 CCNE2O96020 404 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 CACNB1Q02641 598 aaPredicted RBP23.72■■□□□ 1.39
CLN3-209ENST00000561689 GNPTABQ3T906 1256 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 ADSSL1Q8N142 457 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 BCAS3Q9H6U6 928 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 SYNRGQ9UMZ2 1314 aa23.72■■□□□ 1.39
CLN3-209ENST00000561689 EYA4O95677 639 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 KCNA2P16389 499 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 NELFBQ8WX92 580 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 SLC39A2Q9NP94 309 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 SPATA31C2B4DYI2 1134 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 KRT18P05783 430 aaKnown RBP23.71■■□□□ 1.39
CLN3-209ENST00000561689 PAK1Q13153 545 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.71■■□□□ 1.39
CLN3-209ENST00000561689 SHCBP1Q8NEM2 672 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 CDHR1Q96JP9 859 aa23.71■■□□□ 1.39
CLN3-209ENST00000561689 LCTP09848 1927 aa23.7■■□□□ 1.38
CLN3-209ENST00000561689 PASKQ96RG2 1323 aa23.7■■□□□ 1.38
CLN3-209ENST00000561689 SORBS3O60504 671 aa23.7■■□□□ 1.38
CLN3-209ENST00000561689 SEPT14Q6ZU15 432 aa23.7■■□□□ 1.38
CLN3-209ENST00000561689 KIAA0895Q8NCT3 520 aa23.7■■□□□ 1.38
CLN3-209ENST00000561689 PARK7Q99497 189 aaKnown RBP23.7■■□□□ 1.38
CLN3-209ENST00000561689 SAMSN1Q9NSI8 373 aaKnown RBP23.7■■□□□ 1.38
CLN3-209ENST00000561689 PANK4Q9NVE7 773 aa23.7■■□□□ 1.38
CLN3-209ENST00000561689 P4HBP07237 508 aaKnown RBP23.69■■□□□ 1.38
CLN3-209ENST00000561689 EDNRBP24530 442 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 GCLCP48506 637 aaPredicted RBP23.69■■□□□ 1.38
CLN3-209ENST00000561689 CCNA1P78396 465 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 KRT76Q01546 638 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 SPATA1Q5VX52 437 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 RGMBQ6NW40 437 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 KCTD17Q8N5Z5 321 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 NEK9Q8TD19 979 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 TRIM44Q96DX7 344 aaPredicted RBP23.69■■□□□ 1.38
CLN3-209ENST00000561689 FGD4Q96M96 766 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 NACC1Q96RE7 527 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 TCEAL9Q9UHQ7 104 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 RWDD2AQ9UIY3 292 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 DNAJC25-GNG10A0A024R161 153 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 SPC24Q8NBT2 197 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 RUSC1Q9BVN2 902 aa23.69■■□□□ 1.38
CLN3-209ENST00000561689 WDR64B1ANS9 1081 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 MUTP22033 750 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 SP2Q02086 613 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 COASYQ13057 564 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 STIM1Q13586 685 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 EEPD1Q7L9B9 569 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 IFNKQ9P0W0 207 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 TELO2Q9Y4R8 837 aa23.68■■□□□ 1.38
CLN3-209ENST00000561689 JAK3P52333 1124 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 FANCCQ00597 558 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 SP4Q02446 784 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 EHHADHQ08426 723 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 GIT2Q14161 759 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 ZHX3Q9H4I2 956 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 ZSWIM4Q9H7M6 989 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 MORF4L1Q9UBU8 362 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 TRIM49BA6NDI0 452 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 PTMAP06454 111 aaKnown RBP23.67■■□□□ 1.38
CLN3-209ENST00000561689 ZNF18P17022 549 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 QARSP47897 775 aaKnown RBP23.67■■□□□ 1.38
CLN3-209ENST00000561689 PMS1P54277 932 aaKnown RBP23.67■■□□□ 1.38
CLN3-209ENST00000561689 UGCGQ16739 394 aa23.67■■□□□ 1.38
CLN3-209ENST00000561689 ZNF746Q6NUN9 644 aaPredicted RBP23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms