RNA–Protein interactions for RNA: ENST00000561271.1

CDC42BPB-208, Transcript of CDC42 binding protein kinase beta, humanhuman

TSL 3

Gene CDC42BPB, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPB-208ENST00000561271 PRDM12Q9H4Q4 367 aa19.67■□□□□ 0.74
CDC42BPB-208ENST00000561271 PCDHA11Q9Y5I1 949 aa19.67■□□□□ 0.74
CDC42BPB-208ENST00000561271 REV3LO60673 3130 aa19.67■□□□□ 0.74
CDC42BPB-208ENST00000561271 KIAA1671Q9BY89 1806 aa19.67■□□□□ 0.74
CDC42BPB-208ENST00000561271 ADAMTS3O15072 1205 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 BAIAP3O94812 1187 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 THPOP40225 353 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 CLK2P49760 499 aaKnown RBP19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 AP3B2Q13367 1082 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 TCTN1Q2MV58 587 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 PPP2R2DQ66LE6 453 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 RUFY3Q7L099 469 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 LMBR1Q8WVP7 490 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 MXRA8Q9BRK3 442 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 SLC28A3Q9HAS3 691 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 NCOA5Q9HCD5 579 aaKnown RBP19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 SETD4Q9NVD3 440 aa19.66■□□□□ 0.74
CDC42BPB-208ENST00000561271 GSTTP1A0A1W2PQM5 241 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 EPB41L2O43491 1005 aaKnown RBP19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 FOSP01100 380 aaPredicted RBP19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 CXCL10P02778 98 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 MARK3P27448 753 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 SREBF1P36956 1147 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 CCT2P78371 535 aaKnown RBP19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 TOB2Q14106 344 aaPredicted RBP19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 PKN1Q16512 942 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 JAKMIP3Q5VZ66 844 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 CNKSR3Q6P9H4 555 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 TEX2Q8IWB9 1127 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 UPF3BQ9BZI7 483 aaKnown RBP19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 ZSWIM6Q9HCJ5 1215 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 JPH1Q9HDC5 661 aaPredicted RBP19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 KCNH7Q9NS40 1196 aa19.65■□□□□ 0.74
CDC42BPB-208ENST00000561271 ESYT2A0FGR8 921 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 PRPF3O43395 683 aaKnown RBP19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 PARNO95453 639 aaKnown RBP19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 CA3P07451 260 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 CTSHP09668 335 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 PDIA3P30101 505 aaKnown RBP19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 KCNJ6P48051 423 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 WDR5P61964 334 aaKnown RBP19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 ARHGAP4P98171 946 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 NTRK3Q16288 839 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 TMCO2Q7Z6W1 182 aaPredicted RBP19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 HERC6Q8IVU3 1022 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 SLC26A6Q9BXS9 759 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 GLT8D2Q9H1C3 349 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 CYP46A1Q9Y6A2 500 aa19.64■□□□□ 0.73
CDC42BPB-208ENST00000561271 BRWD1Q9NSI6 2320 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 EMSYQ7Z589 1322 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 ARP10275 920 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 DEFB103AP81534 67 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 CEP55Q53EZ4 464 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 SEPT1Q8WYJ6 367 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 GAS2L1Q99501 681 aaPredicted RBP19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 LARP6Q9BRS8 491 aaKnown RBP19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 RNF26Q9BY78 433 aaPredicted RBP19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 ZMYND12Q9H0C1 365 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 SLC9A2Q9UBY0 812 aa19.63■□□□□ 0.73
CDC42BPB-208ENST00000561271 RSPH10B2B2RC85 870 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 MAFGO15525 162 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 RSPH10BP0C881 870 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 EVCP57679 992 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 AKAP17AQ02040 695 aaKnown RBP19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 ITGB3BPQ13352 177 aaPredicted RBP19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 REXO1Q8N1G1 1221 aaKnown RBP19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 USP38Q8NB14 1042 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 PHOSPHO2Q8TCD6 241 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 RASGRP4Q8TDF6 673 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 CCDC12Q8WUD4 166 aaPredicted RBP19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 GLG1Q92896 1179 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 SDF4Q9BRK5 362 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 AGO4Q9HCK5 861 aaKnown RBP19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 ERAP1Q9NZ08 941 aa19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 TCF20Q9UGU0 1960 aaKnown RBP19.62■□□□□ 0.73
CDC42BPB-208ENST00000561271 TTC3P53804 2025 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 NFASCO94856 1347 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 FAM86B1E9PN63 330 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 LGR5O75473 907 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 ARHGEF15O94989 841 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 FAM86B2P0C5J1 330 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 GNAT1P11488 350 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 IFNAR1P17181 557 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 ZNF76P36508 570 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 ADAM17P78536 824 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 PPFIA1Q13136 1202 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 ADGRE1Q14246 886 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 ERICH6BQ5W0A0 696 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 PCYT2Q99447 389 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 OSBPL7Q9BZF2 842 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 C6orf50Q9HD87 102 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 VPS54Q9P1Q0 977 aa19.61■□□□□ 0.73
CDC42BPB-208ENST00000561271 NRCAMQ92823 1304 aa19.6■□□□□ 0.73
CDC42BPB-208ENST00000561271 DDX39AO00148 427 aaKnown RBP19.6■□□□□ 0.73
CDC42BPB-208ENST00000561271 MEIS1O00470 390 aa19.6■□□□□ 0.73
CDC42BPB-208ENST00000561271 ACTR2P61160 394 aa19.6■□□□□ 0.73
CDC42BPB-208ENST00000561271 GRIK4Q16099 956 aa19.6■□□□□ 0.73
CDC42BPB-208ENST00000561271 RUFY4Q6ZNE9 571 aa19.6■□□□□ 0.73
CDC42BPB-208ENST00000561271 CCDC148Q8NFR7 591 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms