RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 SPDYE3A6NKU9 549 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 H3BRB1 525 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 DNAJB2P25686 324 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 EVCP57679 992 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 FGD1P98174 961 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 FUT2Q10981 343 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 PTK7Q13308 1070 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 KIAA0753Q2KHM9 967 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 MCTP2Q6DN12 878 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 GDF6Q6KF10 455 aaPredicted RBP11.6□□□□□ -0.55
USP3-207ENST00000558218 BLOC1S2Q6QNY1 142 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 CCDC82Q8N4S0 544 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 GUCD1Q96NT3 240 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 CDX2Q99626 313 aaPredicted RBP11.6□□□□□ -0.55
USP3-207ENST00000558218 AGXT2Q9BYV1 514 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 TUT1Q9H6E5 874 aaKnown RBP11.6□□□□□ -0.55
USP3-207ENST00000558218 HDAC6Q9UBN7 1215 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 V9GY48 417 aaPredicted RBP11.6□□□□□ -0.55
USP3-207ENST00000558218 SZT2Q5T011 3432 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 LAMA3Q16787 3333 aa11.6□□□□□ -0.55
USP3-207ENST00000558218 KLF18A0A0U1RQI7 1052 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 NOP56O00567 594 aaKnown RBP11.59□□□□□ -0.55
USP3-207ENST00000558218 GNAT1P11488 350 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 SELPP16109 830 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 HEATR3Q7Z4Q2 680 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 TIFAQ96CG3 184 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 KCTD12Q96CX2 325 aaKnown RBP11.59□□□□□ -0.55
USP3-207ENST00000558218 VWCEQ96DN2 955 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 CTAGE1Q96RT6 745 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 TTYH1Q9H313 450 aaPredicted RBP11.59□□□□□ -0.55
USP3-207ENST00000558218 ZNF576Q9H609 170 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 RIC8AQ9NPQ8 531 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 FAM217BQ9NTX9 383 aaPredicted RBP11.59□□□□□ -0.55
USP3-207ENST00000558218 PPP4R2Q9NY27 417 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 BARHL2Q9NY43 387 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 RTEL1Q9NZ71 1219 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 MSRAQ9UJ68 235 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 PCDHA6Q9UN73 950 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 PCDHA8Q9Y5H6 950 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 SNX14Q9Y5W7 946 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 UBIAD1Q9Y5Z9 338 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 SLC4A7Q9Y6M7 1214 aa11.59□□□□□ -0.55
USP3-207ENST00000558218 TRIP12Q14669 1992 aaPredicted RBP11.58□□□□□ -0.56
USP3-207ENST00000558218 GOLGA8AA7E2F4 631 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 GOLGA8BA8MQT2 603 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 EIF5BO60841 1220 aaKnown RBP11.58□□□□□ -0.56
USP3-207ENST00000558218 BAIAP3O94812 1187 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 RPS6KB1P23443 525 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 HOXC8P31273 242 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 SEMA3FQ13275 785 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 AP3B2Q13367 1082 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 Q6ZUG5 572 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 CYFIP1Q7L576 1253 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 OTOP2Q7RTS6 562 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 SLC17A8Q8NDX2 589 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 CCDC12Q8WUD4 166 aaPredicted RBP11.58□□□□□ -0.56
USP3-207ENST00000558218 SCLYQ96I15 445 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 TCEANC2Q96MN5 208 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 JAKMIP1Q96N16 626 aaKnown RBP11.58□□□□□ -0.56
USP3-207ENST00000558218 GPR20Q99678 358 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 ALG1Q9BT22 464 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 PBX4Q9BYU1 374 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 TM6SF1Q9BZW5 370 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 JADE2Q9NQC1 790 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 CXXC1Q9P0U4 656 aaPredicted RBP11.58□□□□□ -0.56
USP3-207ENST00000558218 ZNF215Q9UL58 517 aaPredicted RBP11.58□□□□□ -0.56
USP3-207ENST00000558218 CNTNAP5Q8WYK1 1306 aa11.58□□□□□ -0.56
USP3-207ENST00000558218 NID2Q14112 1375 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 ESYT2A0FGR8 921 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 SMCO2A6NFE2 343 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 PRPF3O43395 683 aaKnown RBP11.57□□□□□ -0.56
USP3-207ENST00000558218 EFCAB14O75071 495 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 CAND2O75155 1236 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 LGALS2P05162 132 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 ZNF286BP0CG31 522 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 CKBP12277 381 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 ITGB5P18084 799 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 METAP2P50579 478 aaKnown RBP eCLIP11.57□□□□□ -0.56
USP3-207ENST00000558218 NAPAP54920 295 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 CHMP4BP1P59074 171 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 MTMR1Q13613 665 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 PFKFB3Q16875 520 aaPredicted RBP11.57□□□□□ -0.56
USP3-207ENST00000558218 WWC2Q6AWC2 1192 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 LRRC8DQ7L1W4 858 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 SERINC5Q86VE9 423 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 SEPT1Q8WYJ6 367 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 GPKOWQ92917 476 aaPredicted RBP eCLIP11.57□□□□□ -0.56
USP3-207ENST00000558218 TNPO1Q92973 898 aaKnown RBP11.57□□□□□ -0.56
USP3-207ENST00000558218 SLC9A7Q96T83 725 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 PCDHA11Q9Y5I1 949 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 EMSYQ7Z589 1322 aa11.57□□□□□ -0.56
USP3-207ENST00000558218 ABHD14A-ACY1A0A1B0GW23 586 aa11.56□□□□□ -0.56
USP3-207ENST00000558218 hCG_1642624A0A1W2PR95 340 aa11.56□□□□□ -0.56
USP3-207ENST00000558218 C17orf102A2RUQ5 167 aa11.56□□□□□ -0.56
USP3-207ENST00000558218 KIF28PB7ZC32 967 aa11.56□□□□□ -0.56
USP3-207ENST00000558218 STXBP3O00186 592 aa11.56□□□□□ -0.56
USP3-207ENST00000558218 CXCL10P02778 98 aa11.56□□□□□ -0.56
USP3-207ENST00000558218 RPLP2P05387 115 aaKnown RBP11.56□□□□□ -0.56
USP3-207ENST00000558218 KCNA2P16389 499 aa11.56□□□□□ -0.56
USP3-207ENST00000558218 ATP2A2P16615 1042 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms