RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 NARFQ9UHQ1 456 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 MEFVO15553 781 aaPredicted RBP13.55□□□□□ -0.24
LDLR-205ENST00000557933 FGRP09769 529 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 RASA1P20936 1047 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 CASP5P51878 434 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 PTGISQ16647 500 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 HERC4Q5GLZ8 1057 aaPredicted RBP13.55□□□□□ -0.24
LDLR-205ENST00000557933 TTBK2Q6IQ55 1244 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 TRMT1LQ7Z2T5 733 aaKnown RBP13.55□□□□□ -0.24
LDLR-205ENST00000557933 TRIM51Q9BSJ1 452 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 GOPCQ9HD26 462 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 CNOT8Q9UFF9 292 aaKnown RBP13.55□□□□□ -0.24
LDLR-205ENST00000557933 NOVA2Q9UNW9 492 aaKnown RBP13.55□□□□□ -0.24
LDLR-205ENST00000557933 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.55□□□□□ -0.24
LDLR-205ENST00000557933 POTEB3A0JP26 581 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 SFI1A8K8P3 1242 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 POTECB2RU33 542 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 ABCB4P21439 1286 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 HSD17B3P37058 310 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 PTK2Q05397 1052 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 PAK2Q13177 524 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 POTEBQ6S5H4 581 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 ATP8A2Q9NTI2 1148 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 BSDC1Q9NW68 430 aaPredicted RBP13.55□□□□□ -0.24
LDLR-205ENST00000557933 A0A1B0GUL6 1792 aa13.55□□□□□ -0.24
LDLR-205ENST00000557933 KRT18P05783 430 aaKnown RBP13.54□□□□□ -0.24
LDLR-205ENST00000557933 COASYQ13057 564 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 UAP1Q16222 522 aaPredicted RBP13.54□□□□□ -0.24
LDLR-205ENST00000557933 CCDC13Q8IYE1 715 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 C6orf50Q9HD87 102 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 HAUS2Q9NVX0 235 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 FBXL5Q9UKA1 691 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 KIAA1024Q9UPX6 916 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.54□□□□□ -0.24
LDLR-205ENST00000557933 CACNA1SQ13698 1873 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 LDHBP07195 334 aaKnown RBP13.54□□□□□ -0.24
LDLR-205ENST00000557933 AMPD3Q01432 767 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 ZNF211Q13398 564 aaPredicted RBP13.54□□□□□ -0.24
LDLR-205ENST00000557933 ASTE1Q2TB18 679 aaPredicted RBP13.54□□□□□ -0.24
LDLR-205ENST00000557933 AADACL2Q6P093 401 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 ATP6V1G3Q96LB4 118 aa13.54□□□□□ -0.24
LDLR-205ENST00000557933 SEPT11Q9NVA2 429 aaKnown RBP13.54□□□□□ -0.24
LDLR-205ENST00000557933 AJAP1Q9UKB5 411 aaPredicted RBP13.54□□□□□ -0.24
LDLR-205ENST00000557933 EIF4E1BA6NMX2 242 aaKnown RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L15C9J2P7 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L13C9JLJ4 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L11C9JVI0 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L18D6R9N7 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L22D6RA61 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L17D6RBQ6 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L19D6RCP7 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L20D6RJB6 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 TTI1O43156 1089 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 EDIL3O43854 480 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 MAP2K2P36507 400 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 MDH1P40925 334 aaKnown RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 KCNA1Q09470 495 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L24Q0WX57 530 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 SHROOM1Q2M3G4 852 aaPredicted RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 USP17L6PQ6QN14 398 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 FBXO33Q7Z6M2 555 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 MYOCDQ8IZQ8 938 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 CCDC114Q96M63 670 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 SPAG5Q96R06 1193 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 NCAPGQ9BPX3 1015 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 EPN3Q9H201 632 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 A0A1W2PQJ5 194 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 FAM196BA6NMK8 535 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 CLIC2O15247 247 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 SLCO1A2P46721 670 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 KRT79Q5XKE5 535 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 SAMD1Q6SPF0 538 aaPredicted RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 UNC13DQ70J99 1090 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 CCDC84Q86UT8 332 aaPredicted RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 AMIGO3Q86WK7 504 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 NBPF5PQ86XG9 351 aaPredicted RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 TAF4BQ92750 862 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 TBC1D31Q96DN5 1066 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 ZMYND12Q9H0C1 365 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 PANK4Q9NVE7 773 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 ATP8A1Q9Y2Q0 1164 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 COL4A3BPQ9Y5P4 624 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 GOLGA6L7A0A1B0GV03 622 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 POTEFA5A3E0 1075 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 PALM3A6NDB9 673 aaPredicted RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 GOLGA6L10A6NI86 522 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 FOXO6A8MYZ6 492 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 SART1O43290 800 aaKnown RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 BUB1BO60566 1050 aaPredicted RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 CPP00450 1065 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 RPSAP08865 295 aaKnown RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 POTEIP0CG38 1075 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 FNTAP49354 379 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 MAGOHP61326 146 aaKnown RBP13.53□□□□□ -0.24
LDLR-205ENST00000557933 CYP4A11Q02928 519 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 FAM26FQ5R3K3 315 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 ALS2CLQ60I27 953 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 POTEGQ6S5H5 508 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 POTEEQ6S8J3 1075 aa13.53□□□□□ -0.24
LDLR-205ENST00000557933 KCTD1Q719H9 257 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms